GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001022-TA|BGIBMGA001022-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen, IPR000437|Prokaryotic membrane
lipoprotein lipid attachment site
         (190 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12870.1 68418.m01477 myb family transcription factor (MYB46)...    29   2.6  
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    29   2.6  

>At5g12870.1 68418.m01477 myb family transcription factor (MYB46)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 280

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 113 MDYINLNKPLPSECRDSVTGNAYFHGCVDEMTWYLEGKTGWLAGI 157
           + +I  N P P       TGN   H C D+ T Y++G  G  AG+
Sbjct: 175 LTHIQTNNPFP-------TGNMISHPCNDDFTPYVDGIYGVNAGV 212


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
           similar to DNA helicase HEL308 [Homo sapiens]
           GI:19110782; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 103 GIGCCGADGPMDYINLNKPLPS-EC 126
           GI  C    P+ Y+NLNK LP+ EC
Sbjct: 936 GIAICWNCSPVYYVNLNKDLPNLEC 960


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.143    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,358,796
Number of Sequences: 28952
Number of extensions: 176105
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 2
length of query: 190
length of database: 12,070,560
effective HSP length: 77
effective length of query: 113
effective length of database: 9,841,256
effective search space: 1112061928
effective search space used: 1112061928
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)