GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001021-TA|BGIBMGA001021-PA|undefined
         (108 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371...    28   1.8  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 25   9.6  

>10_08_0006 -
           14035990-14036135,14036246-14036339,14036845-14037176,
           14038040-14038094,14038682-14038750,14038940-14039039,
           14039212-14039255,14039705-14039873,14040262-14040333,
           14040439-14040519,14040586-14040650,14040796-14041260
          Length = 563

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)

Query: 92  DAWPHLEPCHSQD--DYYD 108
           DAWP  EP  S+D  DYYD
Sbjct: 491 DAWPFKEPVDSRDVPDYYD 509


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 35 VAMRSYGVPDSRREPACEPATCPHV 59
          V +   G  D + +PAC P +C H+
Sbjct: 24 VLVTKSGAADFQEQPACVPFSCGHL 48


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,837
Number of Sequences: 37544
Number of extensions: 35916
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 2
length of query: 108
length of database: 14,793,348
effective HSP length: 72
effective length of query: 36
effective length of database: 12,090,180
effective search space: 435246480
effective search space used: 435246480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)