GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001021-TA|BGIBMGA001021-PA|undefined
         (108 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X56799-1|CAA40135.1| 1365|Drosophila melanogaster supressor two ...    27   5.0  
X56798-1|CAA40134.1| 1364|Drosophila melanogaster suppressor two...    27   5.0  
AE013599-1626|AAF58433.1| 1368|Drosophila melanogaster CG3905-PA...    27   5.0  

>X56799-1|CAA40135.1| 1365|Drosophila melanogaster supressor two of
           zeste protein.
          Length = 1365

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 34  NVAMRSYGVPDSRREPACEPATCPHVTS 61
           N  MRSYG+PD   +P   P  CP  +S
Sbjct: 794 NPQMRSYGLPDLGSKPTL-PMLCPASSS 820


>X56798-1|CAA40134.1| 1364|Drosophila melanogaster suppressor two of
           zeste protein.
          Length = 1364

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 34  NVAMRSYGVPDSRREPACEPATCPHVTS 61
           N  MRSYG+PD   +P   P  CP  +S
Sbjct: 793 NPQMRSYGLPDLGSKPTL-PMLCPASSS 819


>AE013599-1626|AAF58433.1| 1368|Drosophila melanogaster CG3905-PA
           protein.
          Length = 1368

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 34  NVAMRSYGVPDSRREPACEPATCPHVTS 61
           N  MRSYG+PD   +P   P  CP  +S
Sbjct: 795 NPQMRSYGLPDLGSKPTL-PMLCPASSS 821


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.315    0.129    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,604,974
Number of Sequences: 52641
Number of extensions: 64015
Number of successful extensions: 238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 24,830,863
effective HSP length: 75
effective length of query: 33
effective length of database: 20,882,788
effective search space: 689132004
effective search space used: 689132004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)