GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001021-TA|BGIBMGA001021-PA|undefined
         (108 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly...    28   1.5  

>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
           identical to histone acetyltransferase GCN5 [Arabidopsis
           thaliana] GI:13591696; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00439: Bromodomain
          Length = 568

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)

Query: 92  DAWPHLEPCHSQD--DYYD 108
           DAWP  EP  S+D  DYYD
Sbjct: 476 DAWPFKEPVDSRDVPDYYD 494


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.129    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,059
Number of Sequences: 28952
Number of extensions: 25637
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 1
length of query: 108
length of database: 12,070,560
effective HSP length: 71
effective length of query: 37
effective length of database: 10,014,968
effective search space: 370553816
effective search space used: 370553816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)