GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001020-TA|BGIBMGA001020-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    28   0.65 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   2.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   2.0  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   3.5  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   3.5  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    25   4.6  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    24   8.0  

>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
          Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 32 TVYTAKSKVAHPKYNSKTKNNDFAIVTVNKDMAIDGKTTKIITLAKEGSSVPDKTKLLVS 91
          T Y  KS  +  KY S+ K++D +   + + + I    T  + +AK G     KTK  ++
Sbjct: 15 TSYFEKSSKSSKKYGSQNKDSDSSSTCLQQKIEIQWSITDSLYIAKYGKL--KKTKKFIA 72


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 870

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 14 RISKVTVRIGSSNSNKGGTVYTAKSKVAHPKYNSKTKNND 53
          R+   +V  GS+N N    V+       + KY+   KNN+
Sbjct: 12 RLKIQSVTFGSANDNASLQVHNVSKSPEYSKYSYSRKNNE 51


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 1    MGVD-TEDERIMGTRISKVTVRIGSSNSNKGGTVYTAKS 38
            +GVD TE   ++  R+ +  V IGSSNS +  +  T++S
Sbjct: 1085 VGVDETEVPDVINARVRRKNVNIGSSNSIRHVSGSTSRS 1123


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 6   EDERIMGTRISKVTVRI-GSSNSNKGGTVYTAKSKVAHPKYNSKTKNNDFAIVTVN 60
           +DER       K+ + I G  NS +G  VY   S  +  + +    NND+   TVN
Sbjct: 539 KDERPTYPEYLKIPILICGDFNSVQGSGVYDFLSSGSISQNHEDFMNNDYGEYTVN 594


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 61  KDMAID--GKTTKIITLAKEGSSVPDKTKLLVSGWGATSGDSGGPAVKG 107
           KD+A+   G   +     K G+   D+   L    GATSGD+G  A+ G
Sbjct: 117 KDVALQFLGNLFEFFLTRKNGNKPEDERDHLTVV-GATSGDTGSAAIYG 164


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 33  VYTAKSKVAHPKYNSKTKNNDFAIVTVNKDMAIDGKTTKIITLAKE-GSSVPD 84
           +YT++   +HPKY  K +  D     + K+  I+G  T  I +A+E G  V D
Sbjct: 166 LYTSRIDRSHPKYKEKEQEAD----RIAKE--IEGTVTNNIHIAEERGLKVDD 212


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 20  VRIGSSNSNKGGTVYTAK-SKVAHPKYNSKTKNNDFAIVTVNKDMAIDGKTTKIITLAKE 78
           + +GS  +       TAK    A+P            I+ V+ ++ +D  + K+I LA+E
Sbjct: 62  IMVGSRTAENDNPSLTAKLPDPANPDCLLPLNKQPIPII-VDSNLRLDYASLKVIRLARE 120

Query: 79  GSSVPDKTKLLVSGWGATSGDSGGPAVKGNVQLGVVSFGVGCARKN 124
               P    +  S W     DS    +K  V+L + S G  C  +N
Sbjct: 121 RLGKPPLIIVAPSIWQQVQHDS---KLKEAVKL-IQSVGGRCIIRN 162


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 23  GSSNSNKGGTVYTAKSKVAHPKYNSKTKNN 52
           G  NS+KG  ++ + + +  P  +S+  N+
Sbjct: 99  GLENSSKGSALFNSANSIGTPYLSSRNSNS 128


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.127    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,772
Number of Sequences: 5004
Number of extensions: 22988
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 8
length of query: 145
length of database: 2,362,478
effective HSP length: 67
effective length of query: 78
effective length of database: 2,027,210
effective search space: 158122380
effective search space used: 158122380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 50 (24.2 bits)