GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001020-TA|BGIBMGA001020-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap
         (145 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    50   7e-07
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    45   2e-05
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    36   0.009
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    31   0.25 
Z79755-11|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    28   2.3  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        28   2.3  
AC006750-2|AAO38570.1|  478|Caenorhabditis elegans Hypothetical ...    27   5.3  
AC006750-1|AAF60535.1|  527|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 4/46 (8%)

Query: 98  GDSGGP---AVKGNVQL-GVVSFGVGCARKNNPGIYAKVSAAAKWI 139
           GDSGGP   A  G+ +L GVVS+G+GCAR   PG+Y  V +A+ WI
Sbjct: 239 GDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 89  LVSGWGATSGDSGGP-AVKGN----VQLGVVSFGVGCARKNNPGIYAKVSAAAKWIKS 141
           L  G  +  GDSGGP A +      V  GV+S+G GCA+K  PGIY  V+    WI +
Sbjct: 201 LEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWISA 258


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 10/61 (16%)

Query: 94  GATSGDSGGPAV--KGN---VQLGVVSFGV----GCARKNN-PGIYAKVSAAAKWIKSTA 143
           G   GDSGGP +  K N   VQ+G+ S+G     G   +   PG+Y ++S    WI+   
Sbjct: 223 GTAPGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282

Query: 144 G 144
           G
Sbjct: 283 G 283



 Score = 34.7 bits (76), Expect = 0.026
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 34  YTAKSKVAHPKYNSKTKNNDFAIVTVNKDMAIDGKTTKIITLAKEGSSVPDKTKL-LVSG 92
           ++ K    H  YN++T +ND A++ ++ D++  G   K + L  + S +  + K  +V G
Sbjct: 105 FSVKEAYIHSGYNNQTADNDIALLRISSDLSKLG--IKPVCLVHDDSKLLKQYKNGVVIG 162

Query: 93  WGATSG-DSGG 102
           +G T G DS G
Sbjct: 163 YGLTLGEDSSG 173


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 37  KSKVAHPKYNSKTKNNDFAIVTVNKDMAIDGKTTKIITLAKEGSSVPDK 85
           K K+  PK+  K KN+ F  +   K  A+ GK T+  T  KEG  +  K
Sbjct: 94  KEKLDKPKHKGKDKNHSFEAIE-KKYSALLGKLTETTTNFKEGEIIIKK 141


>Z79755-11|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 57   VTVNKDMAID--GKTTKIITLAKEGSSVPDKTKLLVSGWGATSGDSGGPAVKGNVQ 110
            + + KD+ I   GK  +I++  + GS+  D    L++ W AT G SG   V+G +Q
Sbjct: 1442 IPLEKDLKITVMGKR-RILSDQEIGSTTIDLENRLLTKWRATGGLSGQFTVQGELQ 1496


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 57   VTVNKDMAID--GKTTKIITLAKEGSSVPDKTKLLVSGWGATSGDSGGPAVKGNVQ 110
            + + KD+ I   GK  +I++  + GS+  D    L++ W AT G SG   V+G +Q
Sbjct: 1442 IPLEKDLKITVMGKR-RILSDQEIGSTTIDLENRLLTKWRATGGLSGQFTVQGELQ 1496


>AC006750-2|AAO38570.1|  478|Caenorhabditis elegans Hypothetical
           protein Y39F10B.1b protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 68  KTTKIITLAKEGSSVPDKTKLLVSGWGATSGDSGGPAVKGNVQLGVVSFGVGCARKNNP 126
           K  + IT AK G    + T  + S W ATS  S   + K     G +   +G   K  P
Sbjct: 161 KMKRKITQAKNGHKKAEDTMSMASAWSATSKKS-TISTKSGKFFGKIGSKLGLKDKEKP 218


>AC006750-1|AAF60535.1|  527|Caenorhabditis elegans Hypothetical
           protein Y39F10B.1a protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 68  KTTKIITLAKEGSSVPDKTKLLVSGWGATSGDSGGPAVKGNVQLGVVSFGVGCARKNNP 126
           K  + IT AK G    + T  + S W ATS  S   + K     G +   +G   K  P
Sbjct: 210 KMKRKITQAKNGHKKAEDTMSMASAWSATSKKS-TISTKSGKFFGKIGSKLGLKDKEKP 267


>Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical
           protein F02C12.1 protein.
          Length = 815

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 65  IDGKTTKIITL--AKEG------SSVPDKT---KLLVSGWGATSGDSGGPA---VKGNVQ 110
           IDGKT K+IT+    EG       S+P+     K ++     T  D+G P    V+G+++
Sbjct: 700 IDGKTKKVITMDNGDEGFMGAKVESIPNGVAIRKGVIDRIEITLNDAGEPIPHFVEGSIR 759

Query: 111 LGVVSFGVGCARKNNPGIYAKVSAAAK 137
            G    GV   R  N GI   + A  K
Sbjct: 760 TGTEQ-GVVRIRLENRGILGNIRAKPK 785


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.127    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,997
Number of Sequences: 27539
Number of extensions: 128961
Number of successful extensions: 293
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 10
length of query: 145
length of database: 12,573,161
effective HSP length: 75
effective length of query: 70
effective length of database: 10,507,736
effective search space: 735541520
effective search space used: 735541520
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 55 (26.2 bits)