Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001020-TA|BGIBMGA001020-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap
(145 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16550.1 68416.m02113 DegP protease, putative contains simila... 34 0.043
At5g20680.1 68418.m02456 expressed protein predicted proteins, A... 33 0.10
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 30 0.71
At1g50770.1 68414.m05710 hypothetical protein 30 0.71
At5g04895.1 68418.m00514 helicase domain-containing protein simi... 29 1.2
At3g06820.1 68416.m00809 mov34 family protein similar to SP|P467... 29 1.6
At5g19050.1 68418.m02265 expressed protein 27 3.8
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 5.0
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 5.0
At5g24940.1 68418.m02953 protein phosphatase 2C, putative / PP2C... 27 5.0
At2g01470.1 68415.m00070 St12p protein (ST12p) / SEC12p protein,... 27 5.0
At5g54620.1 68418.m06801 ankyrin repeat family protein contains ... 26 8.7
At1g19980.1 68414.m02503 cytomatrix protein-related contains wea... 26 8.7
>At3g16550.1 68416.m02113 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 491
Score = 33.9 bits (74), Expect = 0.043
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 69 TTKIITLAKEGSSVPDKTKLLVSGWGATS--GDSGGPAVKGNVQLGVV 114
T ++T K G+ + TKLL AT+ G+SGGP + G+ LGV+
Sbjct: 181 TKGVVTGVKTGNYLRSSTKLLTIHIDATTYGGNSGGPVITGDKVLGVL 228
>At5g20680.1 68418.m02456 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 551
Score = 32.7 bits (71), Expect = 0.10
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 4 DTEDERIMGTRISKVTVRIGSSNSNKGGTVYTAKSKVAH------PKYNSKTKNNDFAIV 57
DTE+E ++ +VTV SN+N+G + K H PKY DF +
Sbjct: 108 DTEEEE--EKQVEEVTV----SNTNRGKIPTIEEKKGEHEVIASEPKYRKTPTREDFKLE 161
Query: 58 TVNKDMAI-DGKTTKIITLAKEGSSVPDKTKLLVSGWGATSGDS 100
V ++A+ +G+ T+ T KE +S P K+ +L + T G S
Sbjct: 162 KVKHEVAVGEGEATE-TTHIKETNSDP-KSNILATDEERTDGTS 203
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 29.9 bits (64), Expect = 0.71
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 47 SKTKNNDFAIVTVNKDMAIDGKTTKIITLAKEGSSVPDKTKLLVSGWGATSGDSGGPAVK 106
+ T +N FA + N+ + G T A + L + WGAT+G + P +
Sbjct: 275 NNTSSNPFAALLGNQGVTTQGSDTSNNISAPNAETGTPNANPLPNPWGATAGQTTAPG-R 333
Query: 107 GNVQLG 112
N LG
Sbjct: 334 TNAGLG 339
>At1g50770.1 68414.m05710 hypothetical protein
Length = 632
Score = 29.9 bits (64), Expect = 0.71
Identities = 25/118 (21%), Positives = 46/118 (38%)
Query: 8 ERIMGTRISKVTVRIGSSNSNKGGTVYTAKSKVAHPKYNSKTKNNDFAIVTVNKDMAIDG 67
E G++ TV +N + A V P+ KT +++ + N+D+ DG
Sbjct: 439 EEEAGSKGGNNTVLSPFDENNFSDPPFGANDTVVSPRETRKTCHDELNVYESNEDIINDG 498
Query: 68 KTTKIITLAKEGSSVPDKTKLLVSGWGATSGDSGGPAVKGNVQLGVVSFGVGCARKNN 125
L ++GS +KT + + + + V +G + G GC +N
Sbjct: 499 SKEPDCLLHEDGSIAGEKTSSDENFCSSEAEKQEESNIHITVAVGEGNQGQGCLLHDN 556
>At5g04895.1 68418.m00514 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579;contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain, PF00035: Double-stranded RNA binding
motif
Length = 581
Score = 29.1 bits (62), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 21 RIGSSNSNKGGT-----VYTAKSKVAH--PKYNSK-TKNNDFAIVTVNKDMAIDGKTTKI 72
+IG + +K GT + T + H PKY +K K N+F + K M GK +
Sbjct: 467 QIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPQRN 526
Query: 73 ITLAKEGSSV 82
TLA++ ++V
Sbjct: 527 KTLAEKDAAV 536
>At3g06820.1 68416.m00809 mov34 family protein similar to SP|P46736
C6.1A protein {Homo sapiens}; contains Pfam profile
PF01398: Mov34/MPN/PAD-1 family
Length = 324
Score = 28.7 bits (61), Expect = 1.6
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 24 SSNSNKGGTVYTAKSKVAHPKYNSKTKNNDFAIVTVNKDMAIDGKTTKIITLAKEGSSVP 83
S ++NK G + + + K NS K+ ++V NKD ID +++ + + S
Sbjct: 52 SEDANKVGRIQVIAFQSSDGKPNSIPKS--MSLVLANKDSVIDIESSSSSSDSIYQRSSS 109
Query: 84 DKTKLLVSGWGATSGDSGGPAV 105
K +L TSG GG V
Sbjct: 110 SKPELDTIDTATTSGSKGGGRV 131
>At5g19050.1 68418.m02265 expressed protein
Length = 361
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 77 KEGSSVPDKTKLLVSGWGATSGDSGGPAVKGNVQLGVVSFGVG 119
K G++ K+ + G G+ SGD GGP +KG Q V F G
Sbjct: 47 KSGTAKLSKSSSMAGG-GSGSGDYGGP-IKGKNQFRGVLFKYG 87
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.1 bits (57), Expect = 5.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 4 DTEDERIMGTRISKVTVRIGSSNSNK-GGTVYTAKSKVA---HPKYNSKTKNNDFAIVTV 59
D EDE ++T I S G+ ++ +A H K++S +K ND A T
Sbjct: 319 DVEDEASRRDEEGEITESIAPKGSEPFDGSKHSMDGVIASDEHTKFSSPSKPNDEAAATN 378
Query: 60 NKD 62
+KD
Sbjct: 379 DKD 381
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.1 bits (57), Expect = 5.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 4 DTEDERIMGTRISKVTVRIGSSNSNK-GGTVYTAKSKVA---HPKYNSKTKNNDFAIVTV 59
D EDE ++T I S G+ ++ +A H K++S +K ND A T
Sbjct: 319 DVEDEASRRDEEGEITESIAPKGSEPFDGSKHSMDGVIASDEHTKFSSPSKPNDEAAATN 378
Query: 60 NKD 62
+KD
Sbjct: 379 DKD 381
>At5g24940.1 68418.m02953 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase type 2C - Lotus japonicus,
EMBL:AF092432
Length = 447
Score = 27.1 bits (57), Expect = 5.0
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 16 SKVTVRIGSSNSNKGGTVYTAKSKVAHPKYNSKTKNNDFAIVTVNKDM 63
SK GSS+S + V TA + K ++K N D TVNKD+
Sbjct: 282 SKSANNNGSSSSEEANQVPTAVRNDSDHKISAKETNQDH--TTVNKDL 327
>At2g01470.1 68415.m00070 St12p protein (ST12p) / SEC12p protein,
putative 99.8% identical to St12p protein (GI:166878)
{Arabidopsis thaliana}
Length = 393
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 24 SSNSNKGGTVYTAKSKVAHPKYNSKTKNNDFAIVTVNKD 62
++N+ +GG++ T +K+ K++ K N + V+ D
Sbjct: 258 AANTERGGSIITCDTKLWKRKWSKPIKKNSISAFNVSAD 296
>At5g54620.1 68418.m06801 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 431
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 44 KYNSKTKNNDFAIVTVNKDMAIDGKTTKIITLAKEGSSVPDKTKLLVSGWGATSGDS 100
K N K +++N+D+ G T + L GS + KT+ ++ G SG S
Sbjct: 195 KNNHKAFKELLKCISLNRDIQNKGGMTALDILRTNGSHMNIKTEKIIRHSGGKSGVS 251
>At1g19980.1 68414.m02503 cytomatrix protein-related contains weak
similarity to CAST1 [Rattus norvegicus]
gi|22138113|gb|AAL07517
Length = 342
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 21 RIGSSNSNKGGTVYTAKSKVAHPKYNSKTKNNDFAIVTVNKDMA 64
++ SSN K T+ K+K+A + NS K+ + + +T + + A
Sbjct: 213 QLQSSNQEKDETISRLKAKMAEMETNSTKKDEEISKLTRDLESA 256
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.127 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,292
Number of Sequences: 28952
Number of extensions: 129997
Number of successful extensions: 299
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 13
length of query: 145
length of database: 12,070,560
effective HSP length: 75
effective length of query: 70
effective length of database: 9,899,160
effective search space: 692941200
effective search space used: 692941200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 55 (26.2 bits)
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