Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001019-TA|BGIBMGA001019-PA|IPR008555|Protein of unknown
function DUF837
         (209 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.33 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   1.3  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   1.8  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   2.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.1  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 3   LTIQQIILDAKRLAGRLKERETEADALLSETQATYRQIHTMKQYKEEVDTL 53
           LT+Q I+  AKRL G  K    +  ALL    +        ++Y  + D++
Sbjct: 364 LTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSI 414


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 177 MLDLSRRYGSDRVMAPPMEDKDVQTDGPP 205
           ML   RR  S R + PP ED DV +  PP
Sbjct: 189 MLVFDRR--SLRCVVPPTEDCDVPSTIPP 215


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 154 NSEARKDEELYQRLITENKGLREMLDLSRRYGSDRVMAPPMEDKDVQTDG 203
           N+E  K + L +         R + +L RR+   RV+      +D+  DG
Sbjct: 61  NAETFKAQPLNELFDVTRDNYRHITELKRRFPGLRVLLSVGGGEDIGDDG 110


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 143 TVMYKAINMDENSEARKDEELYQRLITENKGLREMLDL 180
           TV +  +N D +S+  K  EL  ++ TE+  + + +++
Sbjct: 325 TVSWCELNFDWSSQVSKAGELIHQIQTEDHDIIDEIEM 362


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 136 ERINEMTTVMYKAINMDENSEARKDEELYQRLI 168
           E   EM   +   + +DE+  AR+  + Y R++
Sbjct: 572 ENKEEMMEFLKSILRLDEDQSARRVAQKYLRVV 604


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 136 ERINEMTTVMYKAINMDENSEARKDEELYQRLI 168
           E   EM   +   + +DE+  AR+  + Y R++
Sbjct: 572 ENKEEMMEFLKSILRLDEDQSARRVAQKYLRVV 604


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 136 ERINEMTTVMYKAINMDENSEARKDEELYQRLI 168
           E   EM   +   + +DE+  AR+  + Y R++
Sbjct: 572 ENKEEMMEFLKSILRLDEDQSARRVAQKYLRVV 604


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 136 ERINEMTTVMYKAINMDENSEARKDEELYQRLI 168
           E   EM   +   + +DE+  AR+  + Y R++
Sbjct: 572 ENKEEMMEFLKSILRLDEDQSARRVAQKYLRVV 604


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.128    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,371
Number of Sequences: 317
Number of extensions: 1345
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 209
length of database: 114,650
effective HSP length: 54
effective length of query: 155
effective length of database: 97,532
effective search space: 15117460
effective search space used: 15117460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)