Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001018-TA|BGIBMGA001018-PA|IPR000639|Epoxide hydrolase,
IPR003089|Alpha/beta hydrolase, IPR000073|Alpha/beta hydrolase fold-1
         (258 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 122 FFLFRLPWLPEQFVSMNDLEIHDKILLVPGNTY---VDKQDVECYKYWFCKPYALTPP 176
           FFLF L W P   V++  +   ++ LL P +T    V  + V C   W    YA+  P
Sbjct: 288 FFLFLLAWTPYATVALIGV-YGNRELLTPVSTMLPAVFAKTVSCIDPWI---YAINHP 341


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 122 FFLFRLPWLPEQFVSMNDLEIHDKILLVPGNTY---VDKQDVECYKYWFCKPYALTPP 176
           FFLF L W P   V++  +   ++ LL P +T    V  + V C   W    YA+  P
Sbjct: 288 FFLFLLAWTPYATVALIGV-YGNRELLTPVSTMLPAVFAKTVSCIDPWI---YAINHP 341


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 33  RGYGDSERVEDVSAYKLNLLID 54
           RG G  ER E +S + LNL ++
Sbjct: 105 RGLGVFERTEPLSPHLLNLEVE 126


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.140    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,046
Number of Sequences: 429
Number of extensions: 3839
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 258
length of database: 140,377
effective HSP length: 56
effective length of query: 202
effective length of database: 116,353
effective search space: 23503306
effective search space used: 23503306
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 43 (21.4 bits)