Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001017-TA|BGIBMGA001017-PA|undefined
         (134 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44230.1 68415.m05504 expressed protein                             31   0.26 
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam...    30   0.46 
At5g42630.1 68418.m05189 myb family transcription factor (KAN4) ...    29   1.1  
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    29   1.1  
At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containi...    28   1.9  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    27   3.2  
At1g69690.1 68414.m08020 TCP family transcription factor, putati...    27   3.2  
At1g78915.1 68414.m09200 expressed protein                             27   4.3  
At1g32120.1 68414.m03952 expressed protein contains Pfam profile...    27   4.3  
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim...    27   5.7  
At1g29470.1 68414.m03605 dehydration-responsive protein-related ...    27   5.7  
At1g05230.2 68414.m00529 homeobox-leucine zipper family protein ...    27   5.7  
At1g05230.1 68414.m00528 homeobox-leucine zipper family protein ...    27   5.7  
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro...    26   9.9  

>At2g44230.1 68415.m05504 expressed protein
          Length = 542

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 6   RAIAAEIPRAPCLED-WMKFKEQTGIEIDIDFNERLRDVDPLKAIERLEQIERETIQRLD 64
           R +AAE  R    E  W+ +    G +ID      +R V+ +   E L+   R  I+ L 
Sbjct: 460 RVVAAEYMRGELEEPAWLNYMRHWGPKIDYGHENEIRGVEKIMVGESLKTTFRSAIKGLP 519

Query: 65  HDQNGRE 71
           ++  G E
Sbjct: 520 NEVFGEE 526


>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
           protein similar to iturin A synthetase C [Bacillus
           subtilis] GI:16040972; contains Pfam profile PF00501:
           AMP-binding enzyme
          Length = 1040

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 53  EQIERETIQRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLEECELWRAEREPEPNNV 112
           E ++  T Q+LDH    +  N      +P  +   +  T S L+       E+   P  +
Sbjct: 563 EDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQ------CEKNNSPKRL 616

Query: 113 -LSFEEFSPRNMTSRNHYESEF 133
            + +E+FSP+ M     ++S F
Sbjct: 617 KIDYEKFSPKRMKENKLWDSGF 638


>At5g42630.1 68418.m05189 myb family transcription factor (KAN4)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA GARP-like putative
           transcription factor KANADI4 (KAN4)  GI:15723592
          Length = 276

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 54  QIERETIQRLDHDQNGRELNNATGVNLPNAAA 85
           ++E+E  QR++ + N  E +  T  N PN+++
Sbjct: 172 KVEKEAEQRIEDNNNNEEADEGTDTNSPNSSS 203


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 10  AEIPRAPCLEDWMKFKEQTGIEIDIDFNERLRDVDPLKAIERLEQIERETIQRLDHD--- 66
           AEI R P ++         G E   +   R+ DV  L A+ER   IE+  I+ +++D   
Sbjct: 62  AEIERLPTVKRMRSTLLDDGDESMTEKGRRVVDVTKLGAVERHLMIEK-LIKHIENDNLK 120

Query: 67  --QNGRELNNATGVNLPNAAASFASCTMSLLEECELWRAEREP 107
             +  R   +  G+ LP     + S  + ++ ECE+   +  P
Sbjct: 121 LLKKIRRRIDRVGMELPTIEVRYES--LKVVAECEVVEGKALP 161


>At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 745

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 79  NLPNAAASFASCTMSLLEECELWRAEREPE 108
           N+ NA  SF    +S+ +E E WR  +EP+
Sbjct: 578 NIYNAEGSFNEANLSI-KEMETWRVRKEPD 606


>At4g38780.1 68417.m05491 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 22  MKFKEQTGIEIDIDFNERLRDVDPLKAIERLEQIERE 58
           M+F      E  +D+ + L DVDPL+AI+ LE  E E
Sbjct: 159 MRFPPFDDEEPPLDYADNLLDVDPLEAIQ-LELDEEE 194


>At1g69690.1 68414.m08020 TCP family transcription factor, putative
           similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
           Oryza sativa]
          Length = 325

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 61  QRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLEECE-LWRAEREPEPNNVLSFEEFS 119
           Q LDH+Q G  L  +T  +LP + +   +   S  +  + LW     P  + V++ + ++
Sbjct: 176 QLLDHNQMGNYLVQSTAGSLPTSQSPATAPFWSSGDNTQNLWAFNINPHHSGVVAGDVYN 235

Query: 120 PRN 122
           P +
Sbjct: 236 PNS 238


>At1g78915.1 68414.m09200 expressed protein
          Length = 385

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 3   EASRAIAAEIPR-APCLEDWMKFKEQTGIEIDIDFNERLRDVDPLKAIERLEQIERETIQ 61
           ++S   +  +PR AP L    +F+ ++G   DIDF+ERL ++      ++  ++ +E   
Sbjct: 48  KSSSKQSVSVPRKAPGLNT--QFEGKSGRSFDIDFDERLENIRRSALEQKKTEVVKE-FG 104

Query: 62  RLDHD 66
            +D+D
Sbjct: 105 PIDYD 109


>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 1206

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 1   MEEASRAIAAEIPRAPCLEDWMKFKEQTGIEID 33
           M+EA R I   + +  C+  WMK    +G EI+
Sbjct: 179 MKEAKRYIEVSLEKKCCVSMWMKEMMNSGNEIE 211


>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 587

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 46  LKAIERLEQIERETIQRLDHDQNGRELNNATG--VNLPNAAASFASCTMSLLEECELWRA 103
           +K  ER+++  R  ++RLD ++    +N   G  VN    A    +    + EE   +  
Sbjct: 523 IKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWAKVAEETSQYDR 582

Query: 104 ERE 106
           E++
Sbjct: 583 EKQ 585


>At1g29470.1 68414.m03605 dehydration-responsive protein-related
          similar to early-responsive to dehydration stress ERD3
          protein [Arabidopsis thaliana] GI:15320410; contains
          Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 32 IDIDFNERLRDVDPLKAIERLEQIER 57
          ID   NER +DVD  K+  + E+++R
Sbjct: 48 IDFSANERTKDVDTTKSDFKSEEVDR 73


>At1g05230.2 68414.m00529 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           homeobox 1 (GP:12002853) {Picea abies}; Strong
           similarity to Phalaenopsis homeobox protein (gb|U34743)
          Length = 721

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 60  IQRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLEEC 98
           +Q + H  NGR+  N   +   N+A S  S  + L E C
Sbjct: 581 VQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESC 619


>At1g05230.1 68414.m00528 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           homeobox 1 (GP:12002853) {Picea abies}; Strong
           similarity to Phalaenopsis homeobox protein (gb|U34743)
          Length = 721

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 60  IQRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLEEC 98
           +Q + H  NGR+  N   +   N+A S  S  + L E C
Sbjct: 581 VQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESC 619


>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 907

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 76  TGVNLPNAAASFASCTMSLLEECELWRAEREPEPNNVLSFEEFSPRNMTSR 126
           TG    +    +A+ + S +  CE+W+ ER    N+     E S ++++ +
Sbjct: 450 TGFKNGSVKVKWANGSTSKVAPCEIWKMERSEYSNSSTVSSEGSVQDLSQK 500


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,119
Number of Sequences: 28952
Number of extensions: 125162
Number of successful extensions: 287
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 14
length of query: 134
length of database: 12,070,560
effective HSP length: 74
effective length of query: 60
effective length of database: 9,928,112
effective search space: 595686720
effective search space used: 595686720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)