GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001017-TA|BGIBMGA001017-PA|undefined
         (134 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   3.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   6.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   8.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   8.9  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 44  DPLKAIERLEQIERETIQRLDHDQNGRELNNATG 77
           D +K +ERL +   +  + L  DQ  R+L+   G
Sbjct: 172 DIVKHLERLREERCDPDRPLPLDQKARDLSPRNG 205


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 21  WMKFKEQTGIEIDIDFNERLRDV 43
           W KF E T  +  +  N+R++ V
Sbjct: 266 WYKFVEGTTRKQAVTLNDRVKQV 288


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 65  HDQNGRELNNATGVNLPN 82
           H+ NG   NN    N PN
Sbjct: 377 HNNNGNNSNNHWRKNNPN 394


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 78   VNLPNAAASFASCTMSLLEE 97
            VN P A A+F +  ++ +EE
Sbjct: 2413 VNDPQARAAFIAHVLAFIEE 2432


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,354
Number of Sequences: 317
Number of extensions: 1096
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 134
length of database: 114,650
effective HSP length: 51
effective length of query: 83
effective length of database: 98,483
effective search space:  8174089
effective search space used:  8174089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)