Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001017-TA|BGIBMGA001017-PA|undefined
(134 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 27 0.75
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 27 0.75
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 1.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 1.7
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 26 2.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 2.3
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 2.3
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 5.3
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 25 5.3
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 5.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 7.0
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 24 7.0
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 24 9.3
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.3
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 24 9.3
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 24 9.3
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 24 9.3
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 24 9.3
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 0.75
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 95 LEECELWRAEREPEPNNVLSFEEFSPRNMTSRNHYES 131
+EEC R +PN SF + P+N S +H S
Sbjct: 286 MEECRAQRYLSSIQPNTAASFPKVVPKNEISVHHDSS 322
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 0.75
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 RAPCLEDWMKFKEQTGIEIDIDFNERL-RDVDPLKAIERLEQIERETIQRLDHDQNGRE 71
R+ L+D+ + K +G +D + +E + D +P +E E++ +ETI HD NG +
Sbjct: 162 RSVTLKDYHRQKLLSGEILDAEEDEPMPNDANPTH-VEEQERLRKETIAAF-HDVNGNK 218
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 26.2 bits (55), Expect = 1.7
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 1 MEEASRAIAAEIPRAPCLEDWMKFKEQTGIEIDIDFNERLRDVDPLKAIERLEQ 54
++E R + RA L FK TG+ D+ ++ ++DV P E +++
Sbjct: 621 LDEERRLLYVGATRAQALLYLSSFKSVTGMFADMQNSDNVQDVSPFLKGEEMKR 674
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 1.7
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 25 KEQTGIEIDIDFNERLRDVDPLKAIERLEQIERETIQRLDHDQNGRELNNATGVNLPNAA 84
+E+T +++ I F E + ++I+ L E+ T+ L + + +N T ++ PN +
Sbjct: 249 REETNMDLTIQFQEADSFLSHSESIKGLSSSEQGTVYSL---KASHDPSNQTQLSSPNKS 305
Query: 85 ASFASCTMS 93
+S S +S
Sbjct: 306 SSPTSIEIS 314
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 33 DIDFNERLRDVDPLKAIERLEQIERETIQRLDHDQNGRELNNATGV 78
D+DF+ ++ D L ++++ E + L+ D +GR + ++ +
Sbjct: 545 DLDFDTEKKEPDALANVQQIGSAEHFGMTELEWDPSGRYVTTSSTI 590
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 108 EPNNVLSFEEFSPRNMTSRNHYESEFE 134
+PNN +S S +NMTS N E +FE
Sbjct: 6 QPNNDIS-SLVSSKNMTSENGLEHQFE 31
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 16 PCLEDWMKFKEQTGIEIDIDFNERLRDVDPLKAIERLEQIERETIQRLDHDQNGRELNNA 75
P L D + E E+ + RL + KA + + + E +RL H Q REL A
Sbjct: 147 PALPDAIDMDEDEK-EMLSEARARLANTQGKKAKRKDREKQLELTRRLSHLQKRREL-KA 204
Query: 76 TGVNL 80
G+N+
Sbjct: 205 AGINI 209
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 24.6 bits (51), Expect = 5.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 103 AEREPEPNNVLSFEEFSPRNMT 124
+ERE N LS SPRNMT
Sbjct: 184 SERESHVANCLSNNSSSPRNMT 205
>SPBC19G7.16 |iws1||transcription elongation factor complex
subunit Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 5.3
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 28 TGIEIDIDFNERLRDVDPLKAIERLEQIERETIQRLDHDQNGRELNNATGVNLP 81
T ++ D+D E D + L ++ + D + GRE T NLP
Sbjct: 38 THVDEDLDNKEEALDFSE----DELSDLDENQFENFDESKIGREAEEPTIYNLP 87
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 24.6 bits (51), Expect = 5.3
Identities = 19/79 (24%), Positives = 35/79 (44%)
Query: 50 ERLEQIERETIQRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLEECELWRAEREPEP 109
E LE+ +E + L+ ++ R L L + S T+ + EL R E+ +
Sbjct: 396 EALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKD 455
Query: 110 NNVLSFEEFSPRNMTSRNH 128
+ + +EE + + S NH
Sbjct: 456 IHAVYYEEENDISSRSGNH 474
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.2 bits (50), Expect = 7.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 37 NERLRDVDPLKAIERLE--QIERETIQRLDHDQNGRELNNATG 77
N RD P+ A +LE + ++ I R D+NGRE+ G
Sbjct: 297 NVSSRDWQPVLANLKLELAKFRQDVIVRKIKDENGREIEYICG 339
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 57 RETIQRLDHDQNGRELNNATGVNLP 81
RE +Q+L + GRE+ ATG P
Sbjct: 182 RELVQKLIPEVIGREIERATGSIFP 206
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 23.8 bits (49), Expect = 9.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 21 WMKFKEQT-GIEIDIDFNERLRDVDPLKAIERLEQIERET 59
W E+T G++ D ++N DV+ L +E + QI T
Sbjct: 414 WTAISEETEGLQDDEEYNGIPVDVNELLNVEFISQIPMST 453
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 64 DHDQNGRELNNATGVNLPNAAASFAS 89
DHD N EL N +N+ + S S
Sbjct: 861 DHDSNAIELRNVITINMKDPIYSVCS 886
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 23.8 bits (49), Expect = 9.3
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 41 RDVDPLKAIERLEQIERETIQRLDHDQNGRELNNATGVNLPNAAASFASCTMS 93
R+ PL+ R + R T R D + +T +N P++ +++ C S
Sbjct: 372 REPIPLRPSSRFYEYTRPTYGRTDTSCSAPGAFCSTQINSPSSYINYSKCAPS 424
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 23.8 bits (49), Expect = 9.3
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 22 MKFKEQTGIEIDIDFNERLRDVDPLKAIERLEQIERETIQRLDHDQNGRELNNATGVNLP 81
+K + +E D++ N + + E + ++ + + E + +T P
Sbjct: 6 LKKQADAAVESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTST--P 63
Query: 82 NAAASFASCTMSLLEECELWRAEREPEPNNVLSFEEFS 119
A+S A+ + + L+ E +P + FE F+
Sbjct: 64 TNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFN 101
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 23.8 bits (49), Expect = 9.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 85 ASFASCTMSLLEECELWRAEREPEPNNVLSFEEFSPRNMTSRN 127
+ FA C L E WR N+ L E+F ++ S N
Sbjct: 712 SKFAGCDKLFLSLLEDWRLVSFLLENSALLLEKFEEEDVDSTN 754
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 39 RLRDVDPLKAIERLEQIERETIQRLDHDQNGRELNNAT 76
RL++V+PL E + + L +NG LN A+
Sbjct: 50 RLQNVNPLGGNESMSAVATSAASSLPTAENGVSLNAAS 87
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,224
Number of Sequences: 5004
Number of extensions: 24736
Number of successful extensions: 70
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 19
length of query: 134
length of database: 2,362,478
effective HSP length: 66
effective length of query: 68
effective length of database: 2,032,214
effective search space: 138190552
effective search space used: 138190552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)
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