Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001017-TA|BGIBMGA001017-PA|undefined
(134 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0419 - 20583812-20584123,20585911-20586006,20586195-205862... 31 0.41
09_02_0594 + 11023016-11023053,11023103-11023349,11024590-11024712 28 2.2
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 28 2.9
05_03_0569 - 15568538-15570049 28 2.9
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296... 27 3.8
01_06_0918 + 32990106-32992196 27 5.1
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 27 6.7
03_01_0318 - 2495617-2497788 27 6.7
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953... 26 8.9
07_01_0222 - 1638965-1640965 26 8.9
04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379... 26 8.9
01_06_1588 + 38474698-38477169 26 8.9
>06_03_0419 -
20583812-20584123,20585911-20586006,20586195-20586298,
20586565-20586649
Length = 198
Score = 30.7 bits (66), Expect = 0.41
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 49 IERLEQIERETIQRLDHDQNGRELNNAT-GVNLPNAAASFASCTMSLLEECELWR 102
++ L+ ++ + ++ G L +A+ ++L N AA SC S L+ C WR
Sbjct: 107 LQNLQNVQLTSKAFCCYEAEGTTLRDASCALHLKNEAACHPSCGQSYLKACHFWR 161
>09_02_0594 + 11023016-11023053,11023103-11023349,11024590-11024712
Length = 135
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 46 LKAIERLEQIERE-TIQRLDHDQNGRELNNATGVNLPNAAASFAS 89
++ I RL +RE +++++ H QN L TG LP A+ F +
Sbjct: 71 VREIRRLIDGDREISVRKIHHAQNQVSLRTLTGTGLPFASPLFGA 115
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 58 ETIQRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLEEC 98
E +Q +DH G+ NA + PNA + + + L E C
Sbjct: 707 EAMQEMDHIAKGQHHGNAVSLLRPNATSGNQNNMLILQETC 747
>05_03_0569 - 15568538-15570049
Length = 503
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 59 TIQRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLEECEL 100
T +RL H + R L+ A LP AAA +CT++ +EE +L
Sbjct: 180 TKRRLHHTRGYRFLDKAA---LPAAAAEAEACTVTEVEEVKL 218
>11_01_0393 +
2961434-2961564,2961862-2961865,2962429-2963970,
2964572-2964675,2964791-2964877,2965378-2965414,
2965729-2965801,2965963-2967494
Length = 1169
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 100 LWRAEREPEPNNVLSFEEFSPRNMTSRNHYESE 132
+WR+ P N ++++E+ PR M S N + E
Sbjct: 536 VWRSRIPPYCNYIVTYEKRKPRRMNSDNKEDLE 568
>01_06_0918 + 32990106-32992196
Length = 696
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 82 NAAASFASCTMSLLEECELWRAEREPEPNNVLSFEEFSPR 121
N A AS + L EEC R+ +P+NV+ FS +
Sbjct: 462 NVALGLASALLYLHEECPQCVVHRDIKPSNVMLDATFSAK 501
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 55 IERETIQRLDHDQNGRELNNATGVNLPNAAASFASCTMSL 94
+ R +Q DH +N + + A SFA C++SL
Sbjct: 148 VYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSL 187
>03_01_0318 - 2495617-2497788
Length = 723
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 47 KAIERLEQIERETIQRLDHDQNGRELNNATGVNLPNAAASFASCT 91
KA L Q+ ET+ L D+ RE+ TG + A F T
Sbjct: 453 KAWSELHQLAIETLTSLTMDEEAREMIGRTGGVVSELVAMFLPAT 497
>11_03_0067 -
9535565-9536157,9536446-9536757,9536948-9537212,
9537810-9538048,9538400-9538568,9539216-9539410,
9539649-9539766,9542140-9542315
Length = 688
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 78 VNLPNAAASFASCTMSLLEECELWRAEREPEPNNVLSFEE 117
+N P + F + L+EE EL E EP + +FEE
Sbjct: 273 INHPLTPSEFVAAWKDLVEEFELQGCECEPVLSTRYAFEE 312
>07_01_0222 - 1638965-1640965
Length = 666
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 88 ASCTMSLLEECELWRAEREPEPNNVLSFEEFSPR 121
ASC + L EECE R+ + +NVL E + R
Sbjct: 453 ASCLLYLHEECESVVIHRDIKASNVLLDSELNGR 486
>04_04_0648 -
26936123-26936447,26936540-26936841,26937043-26937915,
26937995-26938108,26938285-26938612,26938719-26938843,
26938926-26938991,26939099-26939166,26939262-26939343,
26939433-26939546,26939647-26939747,26940429-26940678
Length = 915
Score = 26.2 bits (55), Expect = 8.9
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 37 NERLRDVDPLKAIERLEQIERETIQRLDHDQNGRELNNATGVNLPNAAASFASCTMSLLE 96
N RLRD P+ + LE + R+ + D G N++ + + S S T S L
Sbjct: 556 NSRLRDESPVTLEQHLENV-RKPFANIVKDL-GSSTRNSSSSKVLGRSRSCRSLTGSSLF 613
Query: 97 ECELWRAEREPEPNNVLSFEEFS--PRNMTSRN---HYESEFE 134
E +L + + P PN SF +F+ P+N R +Y++E E
Sbjct: 614 E-DLEKDDCTP-PNR--SFIDFAGRPQNCQRRGSALNYDAESE 652
>01_06_1588 + 38474698-38477169
Length = 823
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 82 NAAASFASCTMSLLEECELWRAEREPEPNNVLSFEEFSPR 121
N A A L EC W + +P N+L E+F P+
Sbjct: 628 NIAVGVAKGLAYLHHECLDWIIHCDVKPENILLDEDFEPK 667
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,982,289
Number of Sequences: 37544
Number of extensions: 152156
Number of successful extensions: 349
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 13
length of query: 134
length of database: 14,793,348
effective HSP length: 75
effective length of query: 59
effective length of database: 11,977,548
effective search space: 706675332
effective search space used: 706675332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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