GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001017-TA|BGIBMGA001017-PA|undefined
         (134 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.6  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 21  WMKFKEQTGIEIDIDFNERLRDV 43
           W KF E +     +  NER+R V
Sbjct: 246 WYKFIEGSSRRQPVQLNERVRQV 268


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 53  EQIERETIQRLDHDQNGRELNNATGVNLPNA 83
           E+  RE   +LD +Q  R +NN   +   N+
Sbjct: 81  EEKFRERTTKLDSEQVNRLVNNCKDITESNS 111


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 55  IERETIQRLDHDQNGRELNNATGV 78
           I++ET+QR  H QN      +T V
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAV 156


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 5/18 (27%), Positives = 12/18 (66%)

Query: 89  SCTMSLLEECELWRAERE 106
           + T++   +C+LW  +R+
Sbjct: 177 TATITAATDCQLWAIDRQ 194


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 70  RELNNATGVNLPNAAASFASCTMSLLEEC 98
           R L N T V LP  AA+F     S    C
Sbjct: 80  RVLRNGTLVLLPFPAAAFRQDVHSAAYRC 108


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 70  RELNNATGVNLPNAAASFASCTMSLLEEC 98
           R L N T V LP  AA+F     S    C
Sbjct: 80  RVLRNGTLVLLPFPAAAFRQDVHSAAYRC 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,959
Number of Sequences: 429
Number of extensions: 1796
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 134
length of database: 140,377
effective HSP length: 52
effective length of query: 82
effective length of database: 118,069
effective search space:  9681658
effective search space used:  9681658
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)