GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001016-TA|BGIBMGA001016-PA|undefined
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   1.3  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   5.1  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   5.1  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   5.1  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 93  VNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSAL 136
           V S     ++   K  +   R+  RRL  +APR+ S  L G++L
Sbjct: 5   VTSSSSCSKLYAIKATISLPRLFYRRLRTMAPRVASHFLGGNSL 48


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 117 RRLHVLAPRLRSLILDGSALSS 138
           RR+H+L   LR   LDG+  SS
Sbjct: 370 RRVHLLVDELRPHFLDGAEFSS 391


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 97  EEVLRIREAKLRVIAERVGLRRLHVLA 123
           +E+L I+E + R++AE +GL +   LA
Sbjct: 72  KEILEIKEREQRMLAEALGLPQPSALA 98


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 68  RLPGYRRIVIPRELTLIELLKQSSGVNSDEEVLRIREAKLR-VIAERVGLRRL 119
           RL  Y ++    ++ +  +++Q S ++  E+   IRE K+R +++ R   R++
Sbjct: 277 RLHWYGKLTPKTDIIVERMVRQGSTLSHSEDRFTIREKKVRELLSGRYDFRKV 329


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.142    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,543
Number of Sequences: 5004
Number of extensions: 10933
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 4
length of query: 154
length of database: 2,362,478
effective HSP length: 67
effective length of query: 87
effective length of database: 2,027,210
effective search space: 176367270
effective search space used: 176367270
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)