Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001016-TA|BGIBMGA001016-PA|undefined
(154 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 33 0.077
09_01_0067 + 1001137-1002708,1003476-1003529 30 0.72
03_02_1019 + 13244003-13245202,13245347-13245493,13245772-132460... 30 0.95
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 28 2.9
10_01_0201 + 2175660-2176892 28 3.8
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 27 5.1
12_01_0640 - 5391407-5391523,5391659-5391748,5391837-5391901,539... 27 6.7
07_01_0437 - 3322132-3322251,3322345-3322569,3322953-3323120,332... 27 6.7
04_03_0008 + 9296711-9298096 27 6.7
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 27 6.7
03_01_0250 - 1937650-1939071,1939375-1939468,1939665-1939870,193... 27 8.9
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 33.5 bits (73), Expect = 0.077
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 78 PRELTLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALS 137
P ++T+I +KQ +N ++++ L+V+AE + + L RSL D S
Sbjct: 334 PLDITVISRMKQFRAMN------KLKKVALKVVAENLSDEEITGLKEMFRSLDTDNSGTI 387
Query: 138 SLRDLGIGLVHLKVDVS 154
+L +L GL L +S
Sbjct: 388 TLEELRSGLPKLGTKIS 404
>09_01_0067 + 1001137-1002708,1003476-1003529
Length = 541
Score = 30.3 bits (65), Expect = 0.72
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 80 ELTLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSL 139
EL L +L GV++ + + AK + + VGL +L +PRLR L +DG + +
Sbjct: 269 ELHLEKLQVSDRGVSALSGLEVLYLAKAPEVTD-VGLGKLATRSPRLRKLHVDGWKANRI 327
Query: 140 RDLGIGLVHLK 150
D G+ V K
Sbjct: 328 GDRGLAAVAQK 338
>03_02_1019 +
13244003-13245202,13245347-13245493,13245772-13246099,
13246930-13246994
Length = 579
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 83 LIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSLRDL 142
L+++L Q++ + S E + + + V+ + + LR+LH+L P S I G A SLR +
Sbjct: 325 LVDVLVQTTRLRSLEMHNNVVQGTV-VVHDAIQLRKLHLLPPTRPSKIFIGEA-PSLRSI 382
Query: 143 G 143
G
Sbjct: 383 G 383
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 88 KQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILD 132
K++ + +EEV R+R +++ G L V RLRSL++D
Sbjct: 618 KKAHTAHLEEEVKRLRVINQQLVKRLQGQAALEVEVVRLRSLLVD 662
>10_01_0201 + 2175660-2176892
Length = 410
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 76 VIPRELTLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPR 125
V+P+EL ++E+L + + A R+I R LRR+H L PR
Sbjct: 18 VLPQEL-VVEILIRLDDLADLARAASACRALRRLITSRAFLRRVHALHPR 66
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 78 PRELTLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALS 137
P + ++ LKQ S +N ++++ LRVIAE + + L + L D S
Sbjct: 381 PLDSAVLSRLKQFSAMN------KLKKMALRVIAESLSEEEIAGLKEMFKMLDTDNSGHI 434
Query: 138 SLRDLGIGL 146
+L +L GL
Sbjct: 435 TLEELKTGL 443
>12_01_0640 -
5391407-5391523,5391659-5391748,5391837-5391901,
5392201-5392288,5392511-5392589,5393232-5393370,
5393530-5393863
Length = 303
Score = 27.1 bits (57), Expect = 6.7
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 93 VNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSLRDLGIGLVHLKVD 152
V DEE L I+E +LR+ + R ++PR+ L A + L G L + VD
Sbjct: 146 VVGDEEYLPIKERELRIACTIAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVD 205
>07_01_0437 -
3322132-3322251,3322345-3322569,3322953-3323120,
3323207-3323322,3323394-3323546,3323655-3323798,
3324475-3325255
Length = 568
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 78 PRELTLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALS 137
P + ++ LKQ S +N ++++ LRVIAE + + L + L D S
Sbjct: 374 PLDSAVLTRLKQFSAMN------KLKKMALRVIAENLSEDEIAGLREMFKMLDTDNSGQI 427
Query: 138 SLRDLGIGL 146
+L +L GL
Sbjct: 428 TLEELKTGL 436
>04_03_0008 + 9296711-9298096
Length = 461
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 98 EVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSLRDLGIGLVHLKVDV 153
EV+ + E VI ++ +R H P + I +LRDLG+ + + +DV
Sbjct: 382 EVIELTEQCSNVILHKLSEKRKHPGCPTITCSIGAQQFNQALRDLGVSVSVIPMDV 437
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 113 RVGLRRLHVLAPRLRSLILDGSALS 137
R LRRL VL P LR LI G+ L+
Sbjct: 450 REWLRRLWVLKPELRELIWKGACLA 474
>03_01_0250 -
1937650-1939071,1939375-1939468,1939665-1939870,
1939986-1940132
Length = 622
Score = 26.6 bits (56), Expect = 8.9
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 94 NSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALS--SLRDLGIG 145
N D VL +R+ R + + +R L L P+L+ L LDGS +S +L+ LG+G
Sbjct: 381 NKDLNVLDLRDC--RSLGDEA-VRSLSCL-PKLQILFLDGSDISDQALKYLGLG 430
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.142 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,145
Number of Sequences: 37544
Number of extensions: 82135
Number of successful extensions: 312
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 11
length of query: 154
length of database: 14,793,348
effective HSP length: 76
effective length of query: 78
effective length of database: 11,940,004
effective search space: 931320312
effective search space used: 931320312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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