GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001016-TA|BGIBMGA001016-PA|undefined
         (154 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.32 
SB_39571| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_22634| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 87  LKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSLRDLGIGL 146
           LK  +GV + E++ ++   ++ V      L     + P L  L L  S +S++RDLG  L
Sbjct: 699 LKSLAGVRNLEDITQL---EMNVNTRENSLGNFGSMLPNLNKLKLSNSIISTVRDLGTCL 755

Query: 147 VHLKV 151
            +L++
Sbjct: 756 TNLRM 760


>SB_39571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 95  SDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSL 129
           SDEE   I + + R  A +  +R  H LAPR+RS+
Sbjct: 163 SDEEFRLILQEQERYYALKAAIRARHGLAPRMRSI 197


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 74  RIVIPRELTLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDG 133
           R V  ++L ++      SG NS    LR  E+   ++   + L+++HV +PR+ +L+L  
Sbjct: 378 RCVSLKDLLVVRAGLLFSG-NSLAIDLRAAESVGNIMLSDLALKQIHVHSPRIANLMLQS 436

Query: 134 SALSSLRDLGIGLVHLKVDV 153
             L++ ++ G   V +K +V
Sbjct: 437 CCLATEKE-GKCKVKIKCEV 455


>SB_22634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 77  IPRELTLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSAL 136
           + R  +++E L+Q       +++LR ++AK++ + +    R        L+  + +G  L
Sbjct: 33  VQRRASVVETLRQQISGGERDDILRQKKAKMQTMGQEE--RETIAQEAGLKIEVPEGQGL 90

Query: 137 SSLRDLGI 144
           +   D+GI
Sbjct: 91  AMKADIGI 98


>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 69  LPGYRRIVIPRELTLIELLKQSSGVNSDEEVLRIREAKLRVIA 111
           LP Y R+++   +   E+   SSG++ D + ++ R   L+++A
Sbjct: 217 LPAYIRMILKLWIVQEEVTVASSGISQDPQSIKRRRNVLKMMA 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.142    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,515
Number of Sequences: 59808
Number of extensions: 87371
Number of successful extensions: 340
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 6
length of query: 154
length of database: 16,821,457
effective HSP length: 76
effective length of query: 78
effective length of database: 12,276,049
effective search space: 957531822
effective search space used: 957531822
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)