GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001016-TA|BGIBMGA001016-PA|undefined
         (154 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035937-1|AAH35937.1|  542|Homo sapiens leucine rich repeat con...    36   0.078
AK024495-1|BAB15785.1|  294|Homo sapiens FLJ00101 protein protein.     36   0.078
BC016439-1|AAH16439.1|  467|Homo sapiens LRRC56 protein protein.       33   0.32 

>BC035937-1|AAH35937.1|  542|Homo sapiens leucine rich repeat
           containing 56 protein.
          Length = 542

 Score = 35.5 bits (78), Expect = 0.078
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 97  EEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSLRDLGIGLVHLKV 151
           +++  +R  ++ V      L    V  P L  L L+GS L SLRDLG  L HL+V
Sbjct: 66  DDLRLVRTLEMCVDTREGSLGNFGVHLPNLDQLKLNGSHLGSLRDLGTSLGHLQV 120


>AK024495-1|BAB15785.1|  294|Homo sapiens FLJ00101 protein protein.
          Length = 294

 Score = 35.5 bits (78), Expect = 0.078
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 97  EEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSLRDLGIGLVHLKV 151
           +++  +R  ++ V      L    V  P L  L L+GS L SLRDLG  L HL+V
Sbjct: 66  DDLRLVRTLEMCVDTREGSLGNFGVHLPNLDQLKLNGSHLGSLRDLGTSLGHLQV 120


>BC016439-1|AAH16439.1|  467|Homo sapiens LRRC56 protein protein.
          Length = 467

 Score = 33.5 bits (73), Expect = 0.32
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query: 124 PRLRSLILDGSALSSLRDLGIGLVHLKV 151
           P L  L L+GS L SLRDLG  L HL+V
Sbjct: 18  PNLDQLKLNGSHLGSLRDLGTSLGHLQV 45


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.142    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,253
Number of Sequences: 224733
Number of extensions: 331474
Number of successful extensions: 951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 3
length of query: 154
length of database: 73,234,838
effective HSP length: 84
effective length of query: 70
effective length of database: 54,357,266
effective search space: 3805008620
effective search space used: 3805008620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)