GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001016-TA|BGIBMGA001016-PA|undefined
         (154 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z68880-1|CAA93098.1|  652|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical
           protein ZC155.7 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 82  TLIELLKQSSGVNSDEEVLRIREAKLRVIAERVGLRRLHVLAPRLRSLILDGSALSSLRD 141
           T I + +    +N+D EV   RE +  V+A    +R L+ L   L  +I+D  ++    D
Sbjct: 221 TEISMAQLQQFMNNDREV---REREKEVMAVNTSIRELNTLFQDLSEMIVDQGSVIDRID 277

Query: 142 LGIGLVHLKV 151
             +    ++V
Sbjct: 278 YNVEQTSIRV 287


>Z68880-1|CAA93098.1|  652|Caenorhabditis elegans Hypothetical
           protein T14G10.1 protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 69  LPGYRRIVIPRELTLIELLKQSSGVNSDEEVLRIREAKLRVIAE 112
           +P  R + +  +LT+ ELLK+S  + +  E+ ++    L+V+AE
Sbjct: 237 VPAVRELFVSDDLTVAELLKESQNLPT-VELTKVDLQWLQVLAE 279


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.142    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,262
Number of Sequences: 27539
Number of extensions: 58643
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 2
length of query: 154
length of database: 12,573,161
effective HSP length: 76
effective length of query: 78
effective length of database: 10,480,197
effective search space: 817455366
effective search space used: 817455366
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)