Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001015-TA|BGIBMGA001015-PA|IPR006662|Thioredoxin-related
         (183 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   2.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   4.5  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 96  LPPLPVGHSTTVTLKLVAPSTSGTHKSFFHLVTD 129
           L  L +GH++ +TL++   S  G   +  HL  D
Sbjct: 420 LASLNLGHNSQLTLEINGLSFQGLEYTLLHLNLD 453


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 55  LEPGARFDQNWSIVNTGTEQW 75
           + PG  F  ++++ N+GT  W
Sbjct: 157 IHPGMTFRYHFNVHNSGTHFW 177


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 4   LLGPSLNYNTASFFLDMS 21
           LLG S+NY   S F++++
Sbjct: 112 LLGYSINYRRISIFVNLA 129


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,826
Number of Sequences: 317
Number of extensions: 1717
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 183
length of database: 114,650
effective HSP length: 53
effective length of query: 130
effective length of database: 97,849
effective search space: 12720370
effective search space used: 12720370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)