Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001015-TA|BGIBMGA001015-PA|IPR006662|Thioredoxin-related
         (183 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N domain-...    54   8e-08
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    33   0.15 
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    31   0.46 
At2g19070.1 68415.m02227 transferase family protein similar to a...    29   2.5  
At3g59610.1 68416.m06651 F-box family protein / jacalin lectin f...    28   3.2  
At1g50730.1 68414.m05705 expressed protein                             28   3.2  
At1g06780.1 68414.m00721 glycosyl transferase family 8 protein c...    27   5.7  
At3g59220.1 68416.m06602 pirin, putative similar to SP|O00625 Pi...    27   9.9  

>At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N
           domain-containing protein / octicosapeptide/Phox/Bemp1
           (PB1) domain-containing protein contains Pfam profiles
           PF00627: Ubiquitin-associated (UBA)/TS-N domain,
           PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain
          Length = 704

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 36  TSPKLPSMSVKASEGPTGSL-EPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLG---A 91
           T PKL S  V       G++  P A F + W + N+G+  WP   +++  GG+      +
Sbjct: 372 TRPKLDSRFVLDVNVIDGTVVAPSAPFTKIWKMRNSGSLVWPQGTQIVWIGGDRFCNSLS 431

Query: 92  TPVYLPP--LPVGHSTTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMT 149
             + +P   +P+     V +  VAP   G + S++ + T  G + G  +WV + V++ + 
Sbjct: 432 VDLQIPKEGVPIYSELDVKVDFVAPELPGRYISYWRMATSDGAKFGQRVWVLIHVDASLK 491

Query: 150 MALVEQLAALPVPSS 164
            ++V +   L + +S
Sbjct: 492 NSVVNEFHGLNLNAS 506


>At4g15410.1 68417.m02355 UBX domain-containing protein low
          similarity to XY40 protein [Rattus norvegicus]
          GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 10/54 (18%)

Query: 14 ASFFLDMSNWNLQAAICCYLDY----------TSPKLPSMSVKASEGPTGSLEP 57
          A+FFL+   WNL AA+  +LD           T P  PS ++  ++ P+ S  P
Sbjct: 24 ANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSSTIAGAQSPSQSHSP 77


>At1g27750.1 68414.m03391 ubiquitin system component Cue
           domain-containing protein very low similarity to ASC-1
           complex subunit P100 [Homo sapiens] GI:12061187;
           contains Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 47  ASEGPTGSLEPGARFDQNW-----SIVNT--GTEQWPGCCRLIQAGGEPLGATPV-YLPP 98
           +++    S+ PGA F QNW     ++VN+  G    P C  +   G   + ATP   +PP
Sbjct: 717 STDNHCNSVPPGATFQQNWPAAGSTLVNSAQGVSGTPPCVPIPAPGQPAVPATPTSQIPP 776

Query: 99  LP 100
            P
Sbjct: 777 SP 778


>At2g19070.1 68415.m02227 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase from
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           profile PF02458: Transferase family
          Length = 451

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 97  PPLPVGHSTTVTLKLVAPSTSG 118
           PPLP G+    TL +VA STSG
Sbjct: 301 PPLPRGYFGNATLDVVAASTSG 322


>At3g59610.1 68416.m06651 F-box family protein / jacalin lectin
           family protein contains Pfam profile PF01419:
           Jacalin-like lectin domain
          Length = 521

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 8   SLNYNTASFFLDMSNWNLQAAICCY 32
           S+NY   S+F+D     L   ICCY
Sbjct: 295 SVNYYPPSYFVDEDKVGLTLVICCY 319


>At1g50730.1 68414.m05705 expressed protein
          Length = 1013

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 104 STTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAALPVPS 163
           S  VT  L+  +    + + F +VTD  + +GD +W  +  ++E+ +     + ALP+ S
Sbjct: 168 SIKVTKLLMDTTVLRFYPTVFVIVTDMLDMLGDMVWERIKQKAELDID-GTVICALPMIS 226

Query: 164 SRLEELL 170
           +  +E L
Sbjct: 227 ALKQERL 233


>At1g06780.1 68414.m00721 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 589

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 104 STTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMAL--VEQLAALPV 161
           +++V +     S+    +  FH+VTD       ++W  + ++S+ T+ +  ++ +  LP 
Sbjct: 311 ASSVVVNSTISSSKEPERIVFHVVTDSLNYPAISMWFLLNIQSKATIQILNIDDMDVLPR 370

Query: 162 PSSRLEELLTQVKDIPTFM 180
              +L  L+ Q  + P F+
Sbjct: 371 DYDQL--LMKQNSNDPRFI 387


>At3g59220.1 68416.m06602 pirin, putative similar to SP|O00625 Pirin
           {Homo sapiens}; contains Pfam profile PF02678: Pirin
          Length = 287

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 100 PVGHSTTVTLKLVAPSTSGT---HKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQL 156
           P GH  T+    V   T+G    H  F     + G Q    LW+ +    +MT    ++L
Sbjct: 82  PKGHKGTIQAGDVQWMTAGRGIIHSEFPEEEVNNGLQ----LWINLPSTEKMTEPKYKEL 137

Query: 157 AALPVPSSRLEELLTQVKDI 176
           ++L +P  R EE   +VK I
Sbjct: 138 SSLDIP--RAEENGVEVKVI 155


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,472,739
Number of Sequences: 28952
Number of extensions: 183115
Number of successful extensions: 445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 8
length of query: 183
length of database: 12,070,560
effective HSP length: 77
effective length of query: 106
effective length of database: 9,841,256
effective search space: 1043173136
effective search space used: 1043173136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)