Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001015-TA|BGIBMGA001015-PA|IPR006662|Thioredoxin-related
(183 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 38 0.001
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.7
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 2.9
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 3.8
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 5.0
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 6.7
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 8.8
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 25 8.8
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 8.8
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 37.5 bits (83), Expect = 0.001
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 38 PKLPSMSVKASEGPTGSLE--PGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPL--GATP 93
PK+ + K E LE PG F + W I NT + WP + GG+ L G P
Sbjct: 270 PKVLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNP 329
Query: 94 VYLPPLPVGH-----STTVTLKLVAPSTSGTHKSFFHLVTDKG 131
P H + TV LK+ S +FF++ +D G
Sbjct: 330 YSFPITSSVHPGEDVNFTVALKVPEKSNKEIFTAFFNICSDDG 372
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 8 SLNYNTASFFLDMSNWNLQAAI 29
S++Y TA +L +NWN+Q A+
Sbjct: 1165 SVSYQTAEQYLSGNNWNVQNAL 1186
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 32 YLDYTSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGTEQW-PGCCRLIQAGGE 87
Y+ Y P M KA+ P+ L PG W + T W G + I G E
Sbjct: 215 YMGYYIHTCPKMKYKATYSPSYLLNPGT---NKWIPIENFTSLWNTGAPKYISFGDE 268
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 3.8
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 13 TASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGT 72
T + +++N Q+ Y YTS LP+ ++ S P ++ + N + +
Sbjct: 145 TTELIIPTTSYNNQSHTLIYSTYTSTYLPNSTIDLSILPHSTISTLSTVSINDTSASLSK 204
Query: 73 EQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGT 119
P + + + + Y P +T+ T+++V P T+GT
Sbjct: 205 TTSPTAGTITET---IVSGSVGYTSTFPASGTTSGTVEVVEP-TAGT 247
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 91 ATPVYLPPLPVGHSTTVTLKLVAPSTSGTHK 121
+TPV++PP ST +T + +P G H+
Sbjct: 20 STPVHIPPPINSESTRITPQHGSPPRFGDHR 50
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 143 TVESEMTMALVEQLAALPVPSSRLEELLTQVKDI 176
T + +T + +QL + + + +LE ++TQVK++
Sbjct: 25 TTSNSVTFHVFQQLDSTNLTNYQLENVITQVKEL 58
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 61 FDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTS 117
F++ + V G +WPG + G T + L PL + T + +L+ P ++
Sbjct: 524 FNEMRNAVINGPHKWPGASHIQNEDG-----TLISLMPLTIEQRTALANQLLTPQSN 575
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 8.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 110 KLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEEL 169
KL+ GT KS V D + D + E V + + V+ A P+PS + EEL
Sbjct: 156 KLLVIVYEGTEKSE-KAVADLNDSSTDVV-PESEVSFQTISSRVDNFFAAPLPSEQAEEL 213
Query: 170 L 170
+
Sbjct: 214 I 214
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 110 KLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAA 158
+LVAP + V G ++ DTLW+ +E M ++QL A
Sbjct: 59 RLVAPFNCSPSSTPLQDVAGVGSKMSDTLWMG-DLEPWMDATFIQQLWA 106
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 842,880
Number of Sequences: 5004
Number of extensions: 33070
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 9
length of query: 183
length of database: 2,362,478
effective HSP length: 69
effective length of query: 114
effective length of database: 2,017,202
effective search space: 229961028
effective search space used: 229961028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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