Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001015-TA|BGIBMGA001015-PA|IPR006662|Thioredoxin-related
(183 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 54 7e-08
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 49 3e-06
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 31 0.42
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 31 0.55
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 28 3.9
08_02_0414 + 16885168-16885301,16885411-16885589,16886351-168863... 28 3.9
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 28 5.1
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 28 5.1
01_01_0371 - 2898038-2898118,2898219-2898896 27 6.8
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 54.0 bits (124), Expect = 7e-08
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 55 LEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGA---TPVYLPP--LPVGHSTTVTL 109
+ P F + W + N G+ WP +LI GG+ P+ +P PV V +
Sbjct: 518 MAPSTPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAV 577
Query: 110 KLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVE 145
VAP+ G + S++ L + G++ G +WV + VE
Sbjct: 578 DFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 613
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 48.8 bits (111), Expect = 3e-06
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 51 PTGS-LEPGARFDQNWSIVNTGTEQWP-GCCRLIQAGGEPLGATP-----VYLPPLPVGH 103
P G+ + P F + W I N G+ WP G C L GG + + P+
Sbjct: 543 PDGTVMAPSTPFTKIWRIHNNGSSMWPYGTC-LTWVGGHLFARNSSVKLGISVDGFPIDQ 601
Query: 104 STTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAAL 159
V + V P+ G + S++ L + G+ G +WV + VE + + +Q AA+
Sbjct: 602 EIDVGVDFVTPAKPGGYVSYWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAI 657
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 31.5 bits (68), Expect = 0.42
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 36 TSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVY 95
T+PK S P L G +NW V+ G ++ CR A A PV
Sbjct: 8 TTPKSGGESGAPRRRPPPQLGSGRA--KNWRPVSAGHQEPTSACRQELAAAAAAAALPV- 64
Query: 96 LPPLPVGHST 105
PP+P G ST
Sbjct: 65 -PPVPRGSST 73
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 4 LLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTSPKLPS 42
L G LNY++ F +S AA+ C LDYT P P+
Sbjct: 49 LAGILLNYDSTWFTQFLSRPTAAAAVSCRLDYTVPPPPA 87
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 28.3 bits (60), Expect = 3.9
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 41 PSMSVKASE-GPTGSL-EPGARFDQNWSIVNTGTEQWP----GCCRLIQAGGEPLGATPV 94
P+++V+ + G SL E GA Q W T ++QWP + G+ GA
Sbjct: 46 PTVAVRGDDNGAAVSLAEVGATTGQWWPCTATASQQWPRGGDDDGPAVAVRGDEDGAA-- 103
Query: 95 YLPPLPVGHSTTVTLKLVAPSTSG 118
+ P VG +TT L A +T+G
Sbjct: 104 -MSPAEVGAATTGQWWLCAATTTG 126
>08_02_0414 +
16885168-16885301,16885411-16885589,16886351-16886389,
16886565-16886593,16886778-16886840,16888188-16888291,
16888409-16888919
Length = 352
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 102 GHSTTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAALPV 161
GH T+ V T+G + G Q G LW+ ++ + +M ++LA+ +
Sbjct: 137 GHKGTINTGDVQWMTAGRGVVHAEMPGGHGVQRGINLWINLSSKDKMVEPRYQELASHDI 196
Query: 162 PSSRLEELLTQV 173
P++ + + +V
Sbjct: 197 PAAERDGVSVKV 208
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 14 ASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVKASEGP 51
A+FFL+ NW L++A+ + D + + A++ P
Sbjct: 33 AAFFLESHNWALESAVRSFYDSADGDASAAAADAADPP 70
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 44 SVKASEGPTGSLEPGARFDQNWSIVNTGTEQWP 76
S +AS T S+ G+ FD +W++V+ G P
Sbjct: 409 SSQASSSGTTSVAAGSAFDSSWTLVSHGQSDDP 441
>01_01_0371 - 2898038-2898118,2898219-2898896
Length = 252
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 92 TPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFF 124
+PV L P S T L+L APS++ + KSFF
Sbjct: 91 SPVVLSP--AASSNTSVLRLPAPSSAQSSKSFF 121
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,761,591
Number of Sequences: 37544
Number of extensions: 246529
Number of successful extensions: 583
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 9
length of query: 183
length of database: 14,793,348
effective HSP length: 78
effective length of query: 105
effective length of database: 11,864,916
effective search space: 1245816180
effective search space used: 1245816180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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