GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001015-TA|BGIBMGA001015-PA|IPR006662|Thioredoxin-related
         (183 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54572| Best HMM Match : CARDB (HMM E-Value=4.4)                    106   9e-24
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)                      46   2e-05
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   27   6.9  
SB_19913| Best HMM Match : zf-C2H2 (HMM E-Value=8.9e-08)               27   9.2  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           27   9.2  

>SB_54572| Best HMM Match : CARDB (HMM E-Value=4.4)
          Length = 292

 Score =  106 bits (255), Expect = 9e-24
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 6/165 (3%)

Query: 1   MQKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDY--TSPKLPSMSV--KASEGPTGSLE 56
           +QKLL   LN +  +FFLDM+NWNLQAAI  + D+  ++ KLPSMS     + G   S+ 
Sbjct: 30  LQKLLDFQLNQSGCAFFLDMANWNLQAAIGAFYDFNCSNDKLPSMSFVRDVTIGEGESVP 89

Query: 57  PGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLG-ATPVYLPPLPVGHSTTVTLKLVAPS 115
           P   F + W + NTGTE+WP    L   GG+ LG  + V + PL  G    V++ + AP 
Sbjct: 90  PNTAFVKTWRLQNTGTEKWPNGVFLKFTGGDQLGPVSSVTVQPLDPGECVDVSVNMFAPD 149

Query: 116 TSGTHKSFFHLVTDKGEQ-IGDTLWVEVTVESEMTMALVEQLAAL 159
            +G  +  + + T  G    GD +WV ++V+    + + +QL+ L
Sbjct: 150 RTGMFQGQWRMCTPTGSSYFGDVIWVILSVDVGGLLGVTQQLSHL 194


>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
          Length = 1338

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 55  LEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATP-VYLPPLPVGHSTTVTLKLVA 113
           + PG +F + W + N G   W         G  P+ A P V  P +  G    + +  +A
Sbjct: 794 VSPGEQFLKRWIVRNDGMVPWSS----KMTGSIPISAAPAVTAPEIHPGEEGEIAVSFIA 849

Query: 114 PSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVES 146
           P   G++ S +  V D G  +G   W E+ V S
Sbjct: 850 PDAFGSYDSKWQFVLD-GRNVGPLFWCEIQVPS 881


>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 66  SIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLP 100
           S+ NT    W  CCR+I     P   TPV   P+P
Sbjct: 811 SVQNTA---WTSCCRMIYVKTNPKLNTPVGFWPIP 842


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 121 KSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEELLTQVK 174
           K   H  T + EQ+G+T    +   +EM    VE +A L V + R EE+  +V+
Sbjct: 8   KDLKHQATTRLEQLGETRNCSLAANTEMEGDKVE-IATLDVKNYRPEEISLKVE 60


>SB_19913| Best HMM Match : zf-C2H2 (HMM E-Value=8.9e-08)
          Length = 532

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 50  GPTGSLEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTL 109
           GPT  LE        +S    G  Q PG  R  +A G    AT     PL    STT   
Sbjct: 280 GPTSGLEKNKALQMRFSYQRIGALQSPGATR--EANGPEKPAT---FKPLT---STTAKT 331

Query: 110 KLVAP-STSGTHKSFFHL 126
            +V+P   S  H   F L
Sbjct: 332 AMVSPVKPSPQHSKGFEL 349


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 34  DYTSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGTEQWPGCCRLI 82
           DY S K    +   S+G   S++    +D+     NTGT Q PG   L+
Sbjct: 630 DYDSNKKEENNNDLSKGQNSSIQRERTYDRGVETDNTGTRQ-PGVVTLL 677


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,224,450
Number of Sequences: 59808
Number of extensions: 241758
Number of successful extensions: 495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 6
length of query: 183
length of database: 16,821,457
effective HSP length: 78
effective length of query: 105
effective length of database: 12,156,433
effective search space: 1276425465
effective search space used: 1276425465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)