GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001015-TA|BGIBMGA001015-PA|IPR006662|Thioredoxin-related
         (183 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069316-1|AAL39461.1|  303|Drosophila melanogaster LD03052p pro...    69   3e-12
AE014298-2564|AAO41692.1|  303|Drosophila melanogaster CG5445-PD...    69   3e-12
AE014298-2563|AAN09441.1|  303|Drosophila melanogaster CG5445-PC...    69   3e-12
AE014298-2562|AAF48724.1|  303|Drosophila melanogaster CG5445-PB...    69   3e-12
AE014298-2561|AAF48723.1|  303|Drosophila melanogaster CG5445-PA...    69   3e-12
BT023707-1|AAY85107.1|  510|Drosophila melanogaster IP01172p pro...    29   3.7  
BT022192-1|AAY51586.1|  510|Drosophila melanogaster IP01169p pro...    29   3.7  
AE014297-4414|AAF56919.1|  510|Drosophila melanogaster CG15504-P...    29   3.7  
BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p pro...    28   8.6  
AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA...    28   8.6  

>AY069316-1|AAL39461.1|  303|Drosophila melanogaster LD03052p
           protein.
          Length = 303

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 2   QKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTS-PKLPSMSVKASEGPTGSLEPGAR 60
           Q L+   +N  +A F+L+MSNW+LQ A+ CYLD+ S   LPSM +   +           
Sbjct: 138 QSLMNNQMNRESARFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQ------ 191

Query: 61  FDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTH 120
             Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T 
Sbjct: 192 -QQAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT- 244

Query: 121 KSFFHLVTDKGEQIGDTLWV 140
              + L T  G   GD +W+
Sbjct: 245 --MWRLCTSNGWYFGDAIWM 262


>AE014298-2564|AAO41692.1|  303|Drosophila melanogaster CG5445-PD,
           isoform D protein.
          Length = 303

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 2   QKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTS-PKLPSMSVKASEGPTGSLEPGAR 60
           Q L+   +N  +A F+L+MSNW+LQ A+ CYLD+ S   LPSM +   +           
Sbjct: 138 QSLMNNQMNRESARFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQ------ 191

Query: 61  FDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTH 120
             Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T 
Sbjct: 192 -QQAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT- 244

Query: 121 KSFFHLVTDKGEQIGDTLWV 140
              + L T  G   GD +W+
Sbjct: 245 --MWRLCTSNGWYFGDAIWM 262


>AE014298-2563|AAN09441.1|  303|Drosophila melanogaster CG5445-PC,
           isoform C protein.
          Length = 303

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 2   QKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTS-PKLPSMSVKASEGPTGSLEPGAR 60
           Q L+   +N  +A F+L+MSNW+LQ A+ CYLD+ S   LPSM +   +           
Sbjct: 138 QSLMNNQMNRESARFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQ------ 191

Query: 61  FDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTH 120
             Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T 
Sbjct: 192 -QQAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT- 244

Query: 121 KSFFHLVTDKGEQIGDTLWV 140
              + L T  G   GD +W+
Sbjct: 245 --MWRLCTSNGWYFGDAIWM 262


>AE014298-2562|AAF48724.1|  303|Drosophila melanogaster CG5445-PB,
           isoform B protein.
          Length = 303

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 2   QKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTS-PKLPSMSVKASEGPTGSLEPGAR 60
           Q L+   +N  +A F+L+MSNW+LQ A+ CYLD+ S   LPSM +   +           
Sbjct: 138 QSLMNNQMNRESARFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQ------ 191

Query: 61  FDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTH 120
             Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T 
Sbjct: 192 -QQAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT- 244

Query: 121 KSFFHLVTDKGEQIGDTLWV 140
              + L T  G   GD +W+
Sbjct: 245 --MWRLCTSNGWYFGDAIWM 262


>AE014298-2561|AAF48723.1|  303|Drosophila melanogaster CG5445-PA,
           isoform A protein.
          Length = 303

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 2   QKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTS-PKLPSMSVKASEGPTGSLEPGAR 60
           Q L+   +N  +A F+L+MSNW+LQ A+ CYLD+ S   LPSM +   +           
Sbjct: 138 QSLMNNQMNRESARFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQ------ 191

Query: 61  FDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTH 120
             Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T 
Sbjct: 192 -QQAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT- 244

Query: 121 KSFFHLVTDKGEQIGDTLWV 140
              + L T  G   GD +W+
Sbjct: 245 --MWRLCTSNGWYFGDAIWM 262


>BT023707-1|AAY85107.1|  510|Drosophila melanogaster IP01172p
           protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 86  GEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFFH 125
           GE LG TP  +PP P     +    LV PS  G+    +H
Sbjct: 417 GEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGSPTHRYH 456


>BT022192-1|AAY51586.1|  510|Drosophila melanogaster IP01169p
           protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 86  GEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFFH 125
           GE LG TP  +PP P     +    LV PS  G+    +H
Sbjct: 417 GEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGSPTHRYH 456


>AE014297-4414|AAF56919.1|  510|Drosophila melanogaster CG15504-PA
           protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 86  GEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFFH 125
           GE LG TP  +PP P     +    LV PS  G+    +H
Sbjct: 417 GEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGSPTHRYH 456


>BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p
           protein.
          Length = 2016

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 32  YLDYTSPKLPSMSVKASEGPTGSLEPGARF---DQNWSIVNTGTEQWPGCCRLIQAGGEP 88
           YLD T+   P+ S     GP  +  PG  +       S+ +TG    P       A   P
Sbjct: 358 YLDITTASAPAPSTNLFGGPNSTFPPGGNYFVPGAPPSLPSTGVVGPPSVGNFF-APAAP 416

Query: 89  LGATPVYLPPLPVGHSTTVTLKLVAPS--TSGT 119
           L       PP  VG   T     V PS  T GT
Sbjct: 417 LPVAQTAAPP-AVGAFFTSAAPSVTPSVFTPGT 448


>AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA
           protein.
          Length = 2016

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 32  YLDYTSPKLPSMSVKASEGPTGSLEPGARF---DQNWSIVNTGTEQWPGCCRLIQAGGEP 88
           YLD T+   P+ S     GP  +  PG  +       S+ +TG    P       A   P
Sbjct: 358 YLDITTASAPAPSTNLFGGPNSTFPPGGNYFVPGAPPSLPSTGVVGPPSVGNFF-APAAP 416

Query: 89  LGATPVYLPPLPVGHSTTVTLKLVAPS--TSGT 119
           L       PP  VG   T     V PS  T GT
Sbjct: 417 LPVAQTAAPP-AVGAFFTSAAPSVTPSVFTPGT 448


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,376,312
Number of Sequences: 52641
Number of extensions: 401391
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 10
length of query: 183
length of database: 24,830,863
effective HSP length: 81
effective length of query: 102
effective length of database: 20,566,942
effective search space: 2097828084
effective search space used: 2097828084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)