Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001015-TA|BGIBMGA001015-PA|IPR006662|Thioredoxin-related
(183 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024089-4|AAK09073.2| 239|Caenorhabditis elegans Hypothetical ... 64 6e-11
Z83236-10|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 30 0.86
Z81468-2|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 30 0.86
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 30 0.86
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 4.6
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 4.6
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 4.6
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 4.6
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 4.6
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 4.6
Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical pr... 27 6.0
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 6.0
Z73102-16|CAA97417.1| 283|Caenorhabditis elegans Hypothetical p... 27 8.0
U64600-4|AAK39201.1| 299|Caenorhabditis elegans C.elegans homeo... 27 8.0
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 27 8.0
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 27 8.0
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Hypothetical ... 27 8.0
>AC024089-4|AAK09073.2| 239|Caenorhabditis elegans Hypothetical
protein C36E6.2 protein.
Length = 239
Score = 64.1 bits (149), Expect = 6e-11
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 2 QKLLGPSL-NYNTASFFLDMSNWNLQAAICCYLDYTSPKLP----------SMSVKA--- 47
++++ P + ++ A+F+LD++NWNL AI + D L S +VK
Sbjct: 28 EEIISPQMIPHDLAAFYLDLANWNLSTAISVFYDQNGDLLHMEEAFRQTCLSSTVKECTN 87
Query: 48 SEGPTGSL--EPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHST 105
E +GS P + F W +VN G +WP RL G+P+ L S
Sbjct: 88 REAISGSFTYRPNSTFFCGWRVVNDGRFRWPDGTRLAFVDGDPIDYEVWKDTVLDPDQSE 147
Query: 106 TVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAALPV 161
+ +++ P+ G K+ F VT + G+++WV + V +++A P+
Sbjct: 148 NIEIRISCPAEMGDFKARFQFVTPQNFFFGESIWVIIRVRPLTEAEAAMEVSAQPM 203
>Z83236-10|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 131 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEE 168
G +GD W +T++ MT+ ++ + +P P + LE+
Sbjct: 47 GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEK 84
>Z81468-2|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 131 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEE 168
G +GD W +T++ MT+ ++ + +P P + LE+
Sbjct: 47 GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEK 84
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 131 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEE 168
G +GD W +T++ MT+ ++ + +P P + LE+
Sbjct: 47 GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEK 84
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 105 TTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESE 147
T L ++AP F ++ DK E + +T+ EV VE E
Sbjct: 1028 TKARLVVLAPEKQKKPPKFVEILVDKTETVDNTVVFEVRVEGE 1070
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 105 TTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESE 147
T L ++AP F ++ DK E + +T+ EV VE E
Sbjct: 1028 TKARLVVLAPEKQKKPPKFVEILVDKTETVDNTVVFEVRVEGE 1070
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 105 TTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESE 147
T L ++AP F ++ DK E + +T+ EV VE E
Sbjct: 1028 TKARLVVLAPEKQKKPPKFVEILVDKTETVDNTVVFEVRVEGE 1070
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 105 TTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESE 147
T L ++AP F ++ DK E + +T+ EV VE E
Sbjct: 1028 TKARLVVLAPEKQKKPPKFVEILVDKTETVDNTVVFEVRVEGE 1070
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 105 TTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESE 147
T L ++AP F ++ DK E + +T+ EV VE E
Sbjct: 1028 TKARLVVLAPEKQKKPPKFVEILVDKTETVDNTVVFEVRVEGE 1070
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 105 TTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESE 147
T L ++AP F ++ DK E + +T+ EV VE E
Sbjct: 1028 TKARLVVLAPEKQKKPPKFVEILVDKTETVDNTVVFEVRVEGE 1070
>Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical
protein F36H2.5 protein.
Length = 392
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 86 GEPLGATPVY----LPPLPVGHSTTVTLKLVAPSTSGTHKS 122
GEPLG T VY L P P G S TV L + + SG+ S
Sbjct: 162 GEPLGGTLVYSAIGLGPYPTGTSATV-LCNIGTTLSGSASS 201
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 6.0
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 42 SMSVKASEGPTGSLEPGARFD----QNWSIVNTG-TEQWPGCCRLIQAGGEPLGATPVYL 96
S S + PT ++ PGA + +IV+T T P L + +TP+ +
Sbjct: 408 SKSSSPNSTPTTTITPGAPSSTLGSSSSTIVSTTITPSTPKVSTLTLSQSPTPTSTPLVV 467
Query: 97 PPLPVGHSTTVTLKLVAPSTSGTHKS 122
G S+TV + PST G S
Sbjct: 468 SSSSSGSSSTVVTSTITPSTQGVPTS 493
>Z73102-16|CAA97417.1| 283|Caenorhabditis elegans Hypothetical
protein B0035.15 protein.
Length = 283
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 128 TDKGEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEELLTQVKDIPT 178
T+K ++ + + E+ +++E +LVE + + + S+ E T KD+PT
Sbjct: 42 TEKSREVSEEIKKELAMKNE---SLVENMNKMYIKSTDPVERWTSTKDLPT 89
>U64600-4|AAK39201.1| 299|Caenorhabditis elegans C.elegans homeobox
protein 30 protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 84 AGGEPLGATPVYLPPLP---VGHSTTVTLKLVAPSTSGTHKSFFH 125
A P+ P+ P LP HS T L PS+S ++S +H
Sbjct: 14 ASSFPMSTHPLLSPKLPGRRPAHSRTFNLSYSHPSSSDNNQSSYH 58
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
protein C23F12.1a protein.
Length = 2329
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 132 EQIGDTLWVEVTVESEMTMALVEQLAALPVPSSR 165
EQI D + VE + E+ + VE+L P PSSR
Sbjct: 834 EQIRDDV-VETAIAPEVPLRPVEELPHSPAPSSR 866
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
protein C23F12.1b protein.
Length = 2747
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 132 EQIGDTLWVEVTVESEMTMALVEQLAALPVPSSR 165
EQI D + VE + E+ + VE+L P PSSR
Sbjct: 834 EQIRDDV-VETAIAPEVPLRPVEELPHSPAPSSR 866
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Hypothetical
protein Y67D8C.5 protein.
Length = 4177
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 116 TSGTHKSFFHLVTDK-GEQIGDTL--WVEVTVESEMTMAL 152
TSG HK+FF L +DK +GD + VE T+E +A+
Sbjct: 1260 TSGCHKAFFELFSDKIIPFLGDNMPEGVEQTMEEWCRLAV 1299
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.132 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,633,802
Number of Sequences: 27539
Number of extensions: 193583
Number of successful extensions: 453
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 19
length of query: 183
length of database: 12,573,161
effective HSP length: 77
effective length of query: 106
effective length of database: 10,452,658
effective search space: 1107981748
effective search space used: 1107981748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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