GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001014-TA|BGIBMGA001014-PA|IPR005178|Protein of unknown
function DUF300
         (421 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   4.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   5.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   7.1  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 105 EFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLND 138
           +FP    Y  SL +CY   ++   + +++ +L D
Sbjct: 32  DFPTNQKYYPSLAKCYACLLMVVKILWVIYWLQD 65


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 256 VVFFSFFQGVIITILVYCGVLKTIFDISDT 285
           ++F  F   +II +++YC + K +   + T
Sbjct: 241 IIFLFFIIPLIILLILYCIIAKNLMSNAAT 270


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 364 PSSSAPNLTTETETP-SVEVRPSAYGSIENTVTNMSMTSETEPLLDASDKSNDNEN 418
           PS+S    ++   +P SV   P    +   T  N+S  + +     +++K+  N N
Sbjct: 132 PSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNN 187


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,188
Number of Sequences: 317
Number of extensions: 4153
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 421
length of database: 114,650
effective HSP length: 59
effective length of query: 362
effective length of database: 95,947
effective search space: 34732814
effective search space used: 34732814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)