Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001014-TA|BGIBMGA001014-PA|IPR005178|Protein of unknown
function DUF300
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 146 4e-35
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 146 4e-35
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 141 1e-33
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 124 1e-28
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016... 120 2e-27
07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807... 117 2e-26
03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470... 76 5e-14
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 73 3e-13
05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524 33 0.32
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 31 1.7
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 31 2.3
12_02_1083 - 25922670-25922867,25922962-25923213,25923674-259238... 29 9.2
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 146 bits (353), Expect = 4e-35
Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 17/230 (7%)
Query: 65 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 124
+S++ I +H+ Y +P QK +I ++ MVP+YA+ + L + + +R+CYEA+
Sbjct: 24 LSLFLIFEHLCAYHQPEEQKFLIGLILMVPVYAVQSFFSLLNSNVAFICELMRDCYEAFA 83
Query: 125 IYNFMKYLLNYLNDGHDLEAVLETKPQ----------------VYHIFPL-CCLAPWEMG 167
+Y F +YL+ L +E + Q V H FPL + W +G
Sbjct: 84 MYCFERYLIACLGGEESTIRFMEGRFQFSESSPLLDVDYDYGIVKHPFPLNWFMRNWYLG 143
Query: 168 REFVHNCKHGILQYTLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAM 227
+F H K GI+QY +++PI ++++ +L +YGE F +PY+ + N SQ A+
Sbjct: 144 PDFYHAVKVGIVQYMILKPICAILAIFMQLIGIYGEGKFAWRYGYPYLAIVLNFSQTWAL 203
Query: 228 YCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVYCGVLK 277
YCL+ FY A + +L+P+KP+ KFL K++VF +++QG+ + L G+ K
Sbjct: 204 YCLIQFYTATKEKLEPIKPLSKFLTFKSIVFLTWWQGIAVAFLFSTGLFK 253
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 146 bits (353), Expect = 4e-35
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 18/232 (7%)
Query: 65 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 124
+S++ I QH+ Y P QK ++ ++ MVP YA+ + + L P+ S+Y LR+ YEA+
Sbjct: 35 LSMYLIFQHLSAYNNPEEQKFVLGVILMVPCYAVESYVSLVNPDTSVYCGILRDAYEAFA 94
Query: 125 IYNFMKYLLNYL----------------NDGHDLEAVLETKPQVYHIFPL-CCLAPWEMG 167
+Y F +Y+ L + G L K ++H FP+ L PW MG
Sbjct: 95 MYCFGRYITACLGGEERTIAFLKREGGGDSGEPLLHGASEKGIIHHHFPVNYILKPWRMG 154
Query: 168 REFVHNCKHGILQYTLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAM 227
F K GI QY +++ +T +S+I + Y + +F +PY A+ N SQ+ A+
Sbjct: 155 VRFYQIIKFGIFQYVIIKTLTASLSLILQPFGAYCDGEFNLRCGYPYFAAVLNFSQYWAL 214
Query: 228 YCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVYCGVLKTI 279
YCLV +Y A + EL +KP+ KFL K++VF +++QG++I I+ G LK++
Sbjct: 215 YCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGIMIAIMYSLG-LKSV 265
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 141 bits (341), Expect = 1e-33
Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 17/230 (7%)
Query: 65 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 124
+S++ + H+ Y P QK ++ ++ MVP YA+ + I L P S+ ++ LR+ YEA+
Sbjct: 34 LSLFLLFNHLSAYKNPEEQKFLVGVILMVPCYAVESYISLVNPSISVDIEILRDGYEAFA 93
Query: 125 IYNFMKYLLNYL--------------NDGHDLEAVLETKPQVY--HIFPL-CCLAPWEMG 167
+Y F +YL+ L + G D+ + Q Y H FP+ L PW +G
Sbjct: 94 MYCFGRYLVACLGGEDRTIEFLKREGSSGSDVPLLDHETGQRYVNHPFPMNYMLKPWPLG 153
Query: 168 REFVHNCKHGILQYTLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAM 227
F K G++QY +++ I ++++I E VY E +FK N + Y + N SQ A+
Sbjct: 154 EWFYLVIKFGLVQYVIIKTICAILAVILESFGVYCEGEFKWNCGYSYTAVVLNFSQSWAL 213
Query: 228 YCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVYCGVLK 277
YCLV FY A + EL +KP+ KFL K++VF +++QGV+I +L G+L+
Sbjct: 214 YCLVQFYAAIKDELAHIKPLAKFLTFKSIVFLTWWQGVVIALLYNWGLLR 263
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 124 bits (300), Expect = 1e-28
Identities = 75/217 (34%), Positives = 122/217 (56%), Gaps = 14/217 (6%)
Query: 70 ITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQS----IYLDSLRECYEAYVI 125
++QH+ ++ P QK I+ I+ M P+YA+N+ +GL + S +LD+++ECYEA I
Sbjct: 39 VSQHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEALAI 98
Query: 126 YNFMKYLLNYLNDGHDLEAVL-ETKPQV-YHIFPLCCLAPWEMGREF--VHNCKHGILQY 181
FM + +YLN V E K +V +H FP+ P + E + K+ Q+
Sbjct: 99 AKFMALMYSYLNISISKNIVPDEIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQF 158
Query: 182 TLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTEL 241
+VRPI ++ + +L +Y V++ + I +N S +A+Y LV+FY EL
Sbjct: 159 VVVRPICAILMITLQLLGLYPSW-----VSWTFTIILN-FSVSMALYALVIFYHLFAKEL 212
Query: 242 KPMKPIGKFLCIKAVVFFSFFQGVIITILVYCGVLKT 278
P KP+ KFLCIK +VFFSF+QG + +L G++++
Sbjct: 213 APHKPLAKFLCIKGIVFFSFWQGFALEVLAAVGIIQS 249
>03_04_0019 +
16500877-16501029,16501184-16501240,16501560-16501668,
16501837-16502021,16502103-16502182,16502869-16503085,
16503394-16503633,16503720-16504028
Length = 449
Score = 120 bits (289), Expect = 2e-27
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 65 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 124
+S+W I QH+ Y+ P QK II +L+MVP+YA ++I L E S+ D LR CYEA+
Sbjct: 35 VSLWLILQHLRSYSNPEEQKWIIAVLFMVPVYASESIISLWHSEFSLACDILRNCYEAFA 94
Query: 125 IYNFMKYLLNYLNDGHDLEAVLETKPQ---VYHIFPLCCLAP-----------WE---MG 167
+Y F +YL+ L + +LE K + + AP W+ +G
Sbjct: 95 LYAFGRYLVACLGGERQVFRLLENKKREELTEQLLESQDKAPVRNRSRVHIFFWDPNALG 154
Query: 168 REFVHNCKHGILQYTLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAM 227
K G++QY +++ + +S I EL YG+ +FK Q A+
Sbjct: 155 ERLYTIIKFGLVQYMILKSLCAFLSSILELFGKYGDGEFK--------------CQTWAL 200
Query: 228 YCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVYCGVL 276
YCLV FY A +L+ ++P+ KF+ KA+VF +++QG+ I I+ + G+L
Sbjct: 201 YCLVKFYNATHEKLQEIRPLAKFISFKAIVFATWWQGLGIAIICHIGIL 249
>07_01_0961 +
8070992-8071015,8071016-8071089,8073051-8073200,
8073307-8073592,8074077-8074220,8074357-8074665
Length = 328
Score = 117 bits (282), Expect = 2e-26
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 1/179 (0%)
Query: 92 MVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHDLEAVLETKPQ 151
+V +YA+ + + L P +IY +S+RE Y+A+VIYNF L ++ + L +
Sbjct: 6 IVQVYAVMSFLSLVLPGSAIYFNSIREIYDAWVIYNFFSLCLAWVGGPGAVVVSLTGRSL 65
Query: 152 VYHIFPL-CCLAPWEMGREFVHNCKHGILQYTLVRPITTVISMICELNDVYGESDFKPNV 210
F + CC + + F+ CK G LQ+ +++PI VI+ I Y + +F N
Sbjct: 66 KPSWFMMTCCFSAVPLDGRFIRRCKQGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQ 125
Query: 211 AFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITI 269
++ YI I +S +A++ L LFY A R L+P P+ KF+ IK+VVF +++Q +I I
Sbjct: 126 SYLYITIIYTISYSMALFALALFYVACRDLLQPYNPVPKFIIIKSVVFLTYWQMLIAAI 184
>03_06_0530 -
34545699-34546013,34546121-34546354,34547006-34547078,
34548226-34548299,34548852-34549004
Length = 282
Score = 76.2 bits (179), Expect = 5e-14
Identities = 30/72 (41%), Positives = 52/72 (72%)
Query: 65 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 124
I++ I +H++HY +P Q+ I+R+++MVP+YA+ + + L P+ SIY +S+RE Y+A+V
Sbjct: 22 IALVHIYRHLLHYAEPIYQRFIVRLIFMVPVYAVMSFLSLILPDNSIYFNSIREIYDAWV 81
Query: 125 IYNFMKYLLNYL 136
IYNF L ++
Sbjct: 82 IYNFFSLCLAWV 93
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 73.3 bits (172), Expect = 3e-13
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 182 TLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTEL 241
+L+ P T+V I L D Y +PY A+ N SQ+ A+YCLV +Y A + EL
Sbjct: 73 SLINPNTSVYCGI--LRDGYEAFAMYCFGRYPYFAAVLNFSQYWALYCLVEWYTATKDEL 130
Query: 242 KPMKPIGKFLCIKAVVFFSFFQGVIITILVYCGVLKT 278
+KP+ KFL K++VF +++QGV+I I+ G+L++
Sbjct: 131 AHIKPLAKFLSFKSIVFLTWWQGVVIAIMYSLGLLRS 167
Score = 58.4 bits (135), Expect = 1e-08
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 65 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 124
+SI+ I +H+ Y P QK ++ ++ MVP YA+ + + L P S+Y LR+ YEA+
Sbjct: 35 LSIYLIFEHLSAYNNPEEQKFVLGVILMVPCYAIESYVSLINPNTSVYCGILRDGYEAFA 94
Query: 125 IYNFMKY 131
+Y F +Y
Sbjct: 95 MYCFGRY 101
>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
Length = 427
Score = 33.5 bits (73), Expect = 0.32
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 367 SAPNLTTETETPSVEVRPSAYGSIENTVTNMSMTSETEPLLDASDKSN 414
+AP ++TE + S +V PS+ G++ N +S T+++ LL DK++
Sbjct: 137 AAPTVSTERTSGSSDVNPSSAGALGNLSHLLSETAQSSMLLPVYDKNH 184
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 31.1 bits (67), Expect = 1.7
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 99 NALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDG--HDLEAVLETKPQVYHIF 156
N+L LE + S+++D L +C V + + L DG DL+ L+ K +
Sbjct: 1315 NSLFALEQADMSVFIDVLDKCQSEQVNLKILNLFTDILGDGLCPDLKQKLQHK---FIGM 1371
Query: 157 PLCCLAPWEMGREFVHNCK 175
+ C + W R H+ K
Sbjct: 1372 DVSCFSSWLEFRTLGHSMK 1390
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 334 SSFSRRLRGKSMYHMTRGYDESSRLMGEPVPSSSAPNLTTETETPSVE 381
S+ SR + + +R DES G PV +++AP + +PSVE
Sbjct: 60 STLSRHIAAELSSSTSRHRDESPGCSGRPVEAAAAPRVVGVYASPSVE 107
>12_02_1083 -
25922670-25922867,25922962-25923213,25923674-25923856,
25923945-25924015,25924058-25924169,25924524-25924583,
25924665-25924780,25925172-25925244
Length = 354
Score = 28.7 bits (61), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 150 PQVYHIFPLCCLAPWEMGREFVHNCKH 176
PQV ++ CCL+ WE F++ K+
Sbjct: 288 PQVKNLATGCCLSAWECSGYFIYRAKY 314
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,573
Number of Sequences: 37544
Number of extensions: 439366
Number of successful extensions: 996
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 19
length of query: 421
length of database: 14,793,348
effective HSP length: 84
effective length of query: 337
effective length of database: 11,639,652
effective search space: 3922562724
effective search space used: 3922562724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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