GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001014-TA|BGIBMGA001014-PA|IPR005178|Protein of unknown
function DUF300
         (421 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 364 PSSSAPNLTTETETPSVEVRPSAYGSIENTVTNMSMTSETEPLLDASDK 412
           P + A  +TT T T +     +   +  NT  N S T+    + +  DK
Sbjct: 651 PGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDK 699


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 332 VGSSFSRRLRGKSMYHMTRGYDESSRLMGEPVPSSSAPNLTTETETPSVEVRPSAYGSIE 391
           +G + +  L     + +T+   E+  L+ E        N   E +   + +   AY S+E
Sbjct: 248 LGKNLNLSLHASLNHTLTKDQPETYELVKEW--RDFVDNYAEENKRDEIVLLTEAYSSLE 305

Query: 392 NTVTNMSMTSETEPLLDASDKSNDNENPQ 420
           NT+    + S           +N +  P+
Sbjct: 306 NTLKYYEVGSNVPFNFKFITDANSSSTPE 334


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,894
Number of Sequences: 429
Number of extensions: 4460
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 421
length of database: 140,377
effective HSP length: 59
effective length of query: 362
effective length of database: 115,066
effective search space: 41653892
effective search space used: 41653892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)