SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001011-TA|BGIBMGA001011-PA|IPR001382|Glycoside
hydrolase, family 47
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...   324   2e-89
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...   135   2e-32
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    35   0.043
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    31   0.40 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    31   0.53 
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    31   0.70 
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      30   1.2  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    30   1.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    29   1.6  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    29   2.8  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    29   2.8  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    29   2.8  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   4.9  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   4.9  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    28   4.9  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    28   4.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   4.9  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    27   6.5  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   8.6  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    27   8.6  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score =  324 bits (797), Expect = 2e-89
 Identities = 175/424 (41%), Positives = 255/424 (60%), Gaps = 22/424 (5%)

Query: 1   MFQHAYDSYLRYAYPYDELRPLSCDGV-------------DTWGSYSLTLIDALDTLAIM 47
           +F H Y++Y+++A+P DEL PLSC+G+             D  G Y LTL+D LDTL ++
Sbjct: 42  LFYHGYNNYMQFAFPNDELAPLSCEGLGPDYENPNNIGVNDVRGDYLLTLVDVLDTLVVL 101

Query: 48  GNYSEFNRVVDIVLQKRHFDADINVSVFETNIRIVGGLLSAHLLS--HKTGMKLEPGWPC 105
           G+   F   VD V+   +F+ D  V VFE  IRI+GGLLS+H+ +   K G ++ P +  
Sbjct: 102 GDREGFQDAVDKVIHHINFERDTKVQVFEATIRILGGLLSSHIFASEEKYGFQI-PLY-- 158

Query: 106 NGPLLRLAEDVAQRLIAAFDTTTGMPYGTINLRSGVPPGETSITCTAGVGTFIIEFGTLS 165
            G LL LA ++A+RL+ AF T TG+P+  INL  GV   E +  C A   + ++EF  L+
Sbjct: 159 KGELLTLATELAERLLPAFRTPTGIPFARINLMKGVAYREVTENCAAAASSLVLEFSMLT 218

Query: 166 RLTGDPLYEEVAYNALKALYHHRSPIGLLGNHIDVMTGRWTAQDAGIGGGIDSYYEYLVK 225
            LTG+  ++  A NA  +++  RS IGLLGN IDV++GRW    +G+G GIDS+YEY  K
Sbjct: 219 ALTGNNKFKASAENAFFSVWKRRSGIGLLGNSIDVLSGRWIYPVSGVGAGIDSFYEYAFK 278

Query: 226 GAILLEKPELMSMFLEARQSIEKYLKKDDWFVWATM--LRGHVTLPVFQSLESYWPGLLS 283
             I L  P  + ++ ++ +S+  Y    + + +  +    G V      SL +Y+PGLL 
Sbjct: 279 SYIFLGDPRYLEVWQKSLESLRHYTASLNEYYYQNVYSANGMVMSRWVDSLSAYFPGLLV 338

Query: 284 LIGESDAAMRIIHNYHSVWRQYGFTPEVYNLGTGEASSSRESYPLRPELIESIMYLYRDT 343
           L GE + A ++   Y S++ ++G  PE YNL T   S     YPLRPE  ES  YLYR T
Sbjct: 339 LAGELELAKKMHLYYFSIYLKFGQLPERYNLYT--KSIELNGYPLRPEFAESTYYLYRAT 396

Query: 344 RDPILLQMGEDILRSIQHSARTPCGYATIKDVRDHRKEDRMESFFLAETTKYLYLLFDPD 403
           +D   L +GE +L +I++   TPCG+A ++++  +   +RMESFFL+ET KYL+LLFD D
Sbjct: 397 KDVFYLHVGELLLSNIENHLWTPCGFAAVENLEKYTLSNRMESFFLSETLKYLFLLFDDD 456

Query: 404 NFIH 407
           N IH
Sbjct: 457 NPIH 460


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score =  135 bits (327), Expect = 2e-32
 Identities = 155/490 (31%), Positives = 219/490 (44%), Gaps = 79/490 (16%)

Query: 2   FQHAYDSYLRYAYPYDELRPLSCDGVDTWGS-YSLTLIDALDTLAIMGNYSEFNRVVDIV 60
           F  ++  Y  Y +  DE  P+   G +         +ID+LDT+ IMG   +  R  + V
Sbjct: 54  FIESWTDYETYGWGKDEYYPIIKRGRNYLRKGMGWMIIDSLDTMMIMGLDEQVLRAREWV 113

Query: 61  LQKRHFDADIN-VSVFETNIRIVGGLLSAHLLSHKTGMKLEPGWPCNGPLLRLAEDVAQR 119
                ++ D   VSVFET IRI+GGLLS++ LS     KL          L  A D+A R
Sbjct: 114 NNSLTWNQDDEEVSVFETTIRILGGLLSSYHLSQD---KL---------YLDRAVDLADR 161

Query: 120 LIAAFDTTTGMPYGTINL--RSGVPPGETSITCTAGVGTFIIEFGTLSRLTGDPLYEEVA 177
           L+AA++T+TG+P   +NL  R            TA  GT  +E   LS LTGDP Y   A
Sbjct: 162 LLAAYNTSTGLPRSNVNLGTRKSRKRTREYFVSTAESGTVQMELRYLSYLTGDPKYWITA 221

Query: 178 YNALKALYHHR--SPIGLLGNHIDVMTGRWTAQDAGIGGGIDSYYEYLVKGAILLEKPEL 235
              ++ L      S  GL+   ++++TG +  ++  +G   DSYYEYL+K  + L     
Sbjct: 222 DKTMEVLLGDATWSHTGLVPITVNLITGAYVGRNIRLGSHGDSYYEYLLKQDLQLFSSGT 281

Query: 236 M--SMFLEARQSIEKYL---KKDDWFVWATMLRG---HVTLPVFQSLESYWPGLL---SL 284
           +    F  +   I +YL      + F +   L G   H  LP    L  + PG L   + 
Sbjct: 282 VYRKAFDLSVDGIIEYLLNYTTPNHFAYIAELPGGLEHAQLPKMDHLVCFLPGTLMWGAT 341

Query: 285 IGESDAAMRIIHNY---------------HSVWRQY-----GFTPEVYNLGTGEA----- 319
            G S  A R   N+                + +  Y     G  PE+      +      
Sbjct: 342 NGTSLEAARTSKNWGTRQERDVKLAQELMRTCYEMYNMTATGLAPEIVFFDVDQTKNEIY 401

Query: 320 SSSRESYPL-RPELIESIMYLYRDTRDPILLQMGEDILRSIQHSARTPCGYA-TIKDVRD 377
           S  R+ + L RPE +ES+  LYR TRD I  + G +I  S    +R P   A T  D  +
Sbjct: 402 SKRRDQHNLMRPETVESLFILYRITRDEIYREWGWNIFVSFLRYSRLPGRDAFTCLDSVE 461

Query: 378 HRK----EDRMESFFLAETTKYLYLLFDPDNFIHNPGVRGTVIDTPNGECVVDLGGYIFN 433
            +K     D+ ESF+ AET KYLYLLF+ D+F                  ++ L  Y FN
Sbjct: 462 SKKVKDQRDKTESFWFAETLKYLYLLFE-DDF-----------------SILPLTNYTFN 503

Query: 434 TEAHPIDPNM 443
           TEAHP  PN+
Sbjct: 504 TEAHPF-PNI 512


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 504 IDHTEPKERSDENEPEQNQVLIKTESRTGYVNLDGTERENANESNLSDLVKETINKYYND 563
           IDHT+      +  P+ +   +K+E  +  V ++  E     +++  ++ KE       D
Sbjct: 315 IDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQETPVHLKADEREIRKEVTETLKGD 374

Query: 564 TINA-ETQENVKHSAEEPTAGSSQTVEVDDIIVPEKSEVQLPSVTKTKEVMNM 615
            +     Q NVK S EE T       E++DI++ +K E+    +TKT+  M +
Sbjct: 375 ELRKISLQVNVKFSEEEVTLEDVDDDEIEDILL-DKDEI----LTKTQVWMEL 422


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 549 LSDLVKETINKYYNDTINAETQENV-KHSAEEPTAGSSQTVEVDDIIVPEKSEVQLPSVT 607
           LSDL+   I   Y+D  + E  + V K S  E T   S+   VD+   PE  +  LP  T
Sbjct: 88  LSDLLNNYIKSIYSDLTDVELSDKVIKASYIEDTISFSKPKTVDN--YPEYIQ-HLPGFT 144

Query: 608 KTKEVMNMLPKVI 620
           K K V N  P+++
Sbjct: 145 K-KVVQNSNPEIL 156


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 514  DENEPEQNQVLIKTESRTGYVNLDGT-----EREN--ANESNLSDLVKETINKYYNDTIN 566
            DEN  ++N +    E+R    N  G      EREN  +NE N  +  ++     + +   
Sbjct: 1461 DENSEDENGINDTKENRATESNFSGVDSMSKERENVSSNEDNSPEAFEDIFGILFKNESG 1520

Query: 567  AETQENVKHSAEEPTAGS 584
             E Q+N++ S++    GS
Sbjct: 1521 LEEQQNLEPSSQMDKEGS 1538


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 415 VIDTPNGECVVDLGGYIFNTEAHPIDPNMLYCCHEARQGINISEVYSIY 463
           V+D+   E V +L  Y+ N EA+  D N+L  C E     N+ EV +++
Sbjct: 9   VVDSSVEEQVEELAMYLDNLEANT-DKNVLALCREYLASENVKEVLNLF 56


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 511 ERSDENEPEQNQVLIKT-----ESRTGYVNLDGTERENANESNLSDLVKETINKYYNDTI 565
           E SDE E + N+   K+      ++ GY   +G + E+A + + S L+K      +    
Sbjct: 585 ELSDEEEDDTNKSTSKSPKTPKNTKFGYQEFEGIDEEDAQDYSPSPLIKSFNELMFEGEE 644

Query: 566 NAETQENVKHS 576
           + E +E+V+++
Sbjct: 645 DEEGEEDVENA 655


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 508 EPKERSDENEPEQNQVLIKTESRTGYVNLD-GTERENANESNLSDLVKETINKYYNDTIN 566
           +PK    E  PE+ +  I  ES+T  V++D G  +     S +SD   E +N  + +  +
Sbjct: 647 KPKTEISEVLPEEKRKAICDESQTVRVSIDRGVTKTRDVSSPVSDEKSENVN--HEEANS 704

Query: 567 AETQENVKHSAEEP 580
             T  NV HS+ +P
Sbjct: 705 GHTVMNV-HSSLDP 717


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 560 YYNDTINAETQENVKHSAEEPTAGSSQTVEVDDI 593
           Y+ D++N ET+++V  S  E    S++T E+D I
Sbjct: 666 YFIDSLNLETKDSVLESNWERFISSTETYELDSI 699


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 599 SEVQLPSVTKTKEVMNMLPKVIQDFLNS 626
           +EV++ +VT+  E+ N +PK I+D  N+
Sbjct: 105 AEVKMMAVTEINEISNKIPKSIEDLENT 132


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/50 (20%), Positives = 30/50 (60%)

Query: 566 NAETQENVKHSAEEPTAGSSQTVEVDDIIVPEKSEVQLPSVTKTKEVMNM 615
           + + +E++ ++ +E + G ++  E+D+ I     ++++PS+ +  +V  M
Sbjct: 3   STKEEEDLNNNIDEISDGENEEEELDEAIAAALQKIEVPSIPRRVKVYEM 52


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 564 TINAETQENVKHSAEEPTAGSSQTVEVD-DIIVPEKSEVQLPSVTKTKEVMNMLPKVIQD 622
           T   +  E    + E P+A  S+TV  D   +  E S V   +    K V     +++ D
Sbjct: 8   TSEYDETEGFTSNQEGPSAAPSKTVASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMND 67

Query: 623 FLNS----DWKSKPKCEPQKMLERIRREQKYPDHPDVYKYELLLTP 664
           F        WK     + +K    +   +   D PD YK  L+  P
Sbjct: 68  FEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEP 113


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 651 DHPDVYKYELLLTPAPSFLQRISLAGEFLNKKQL 684
           DHP VYK  L  T    F Q+++ A +FL  + L
Sbjct: 120 DHPPVYKAGLNETLVRHFTQQLASALQFLRSRSL 153


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 522 QVLIKTESRTGYVNLDGTEREN---ANESNLSDLV----KETINKYYNDTINAETQENVK 574
           Q+ + ++   G  NL+  +  +    ++S+L D +    K+TIN  Y D ++  T E   
Sbjct: 118 QICVHSQRNDGDDNLESDKFVDPFIGDDSDLDDDIYIHDKQTINSEYADDVSDNTDEERT 177

Query: 575 HSAEEPTAGSSQTVEVDD 592
            S  +  + S++  + DD
Sbjct: 178 ESKGQQESNSAEEYDDDD 195


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 38 IDALDTLAIMGNYSEFNRVVDIVLQKRHFDADINVSVFETNIRIVGGLL 86
          I+  DT     N SEFN  V    +KR FD D N+ + E+     GG+L
Sbjct: 4  IETRDTGTKNDNSSEFNLSVKSHKRKRSFD-DENLELEESREETSGGIL 51


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 602 QLPSVTKTKEVMNMLPKVIQDFLNSDWKSKPKCEPQKMLERIRREQKYPDHPDVYKYELL 661
           +LPS  K    +  +P V  +FL SD     +  PQ   E     +K P   D+   E+L
Sbjct: 177 RLPSQAKKTSAIERVP-VNLNFLQSD-NLVVQSSPQTNFENFEFPKKIPSKEDLETREVL 234

Query: 662 LTP 664
           L P
Sbjct: 235 LLP 237


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 321  SSRESYPLRPELIESIMYLYRDTRDPILLQMGEDILRSIQHSARTPCGYATIKDVRDHRK 380
            +S ++Y     L++   YLY+ +  P LL+    +  +++ S ++   Y  ++      K
Sbjct: 1568 NSSKTYMHLVTLLKERSYLYKVSNIPSLLESAAKLSTTLEDSKKSLLKYFELQ----RHK 1623

Query: 381  EDRMESFFLAETTKYLYLLFDP-DNFIHN-------PGVRGTVIDTPN 420
              R+  +FL +    + L+ +P D F+ N       PG+R  ++DT N
Sbjct: 1624 ISRL--YFLGDDD-LMELISNPCDPFVINKQIIKLYPGIRSLIVDTEN 1668


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/94 (15%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 510 KERSDENEPEQNQVLIKTESRTGYVNLDGTERENANESNLSDLVKETINKYYNDTINAET 569
           + ++D    + ++ + +   +   +N    + E+   +NLSD +   I     + ++A++
Sbjct: 8   ESKTDWASLDSDEEVQRISDKVNQLNTSENKNEDQKATNLSDRLGPKIT----ENVDAKS 63

Query: 570 QENVKHSAEEPTAGSSQTVEVDDIIVPEKSEVQL 603
           +++   +     A + Q+   +  ++P K+EV++
Sbjct: 64  EQDKATNTIAEDANTKQSENDESNLIPNKNEVRV 97


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/82 (20%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 546 ESNLSDLVKETINKYYNDTINAETQENVKHSAEEPTAGSSQTVEVDDIIVPEKSEVQLPS 605
           ++N +   K T +    +T++A+  +N+K + ++   GSS     +  ++ ++  +    
Sbjct: 837 DANANIYDKLTADHTNYETVSADINQNLKETLDKLLNGSSDFKNNEIELLHDQIRITNAK 896

Query: 606 VTKTKEVMNMLPKVIQDFLNSD 627
           + K ++++N   K I+D L S+
Sbjct: 897 LEKREKLIN-ASKYIEDTLRSE 917


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 562 NDTINAETQENVKHSAEEPTAGSSQTVEVDDIIVPEKSEVQLPS 605
           +D  N E  EN++   +EP  G++ ++ VD+   PE S   LP+
Sbjct: 2   SDINNNEPAENIEQPKQEPEDGNN-SMSVDE--QPETSSTNLPT 42


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,333
Number of Sequences: 5004
Number of extensions: 141063
Number of successful extensions: 416
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 23
length of query: 686
length of database: 2,362,478
effective HSP length: 78
effective length of query: 608
effective length of database: 1,972,166
effective search space: 1199076928
effective search space used: 1199076928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)

- SilkBase 1999-2023 -