GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001011-TA|BGIBMGA001011-PA|IPR001382|Glycoside
hydrolase, family 47
         (686 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              25   2.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   8.3  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 530 RTGYVNLDGTERENANESNLSDLVKETINKYYNDTINAETQENVKHSAE 578
           + G+VN D T  E       + L  E +N+  N+  +     + K S++
Sbjct: 69  KVGFVNADTTFNEEKFRERTTKLDSEQVNRLVNNCKDITESNSCKKSSK 117


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 509 PKERSDENEPEQNQVLIKTESRTGYVNLDGTERENANESNLSD 551
           PK+  DE E E+  V+ +  +  G +N +G      +E +  D
Sbjct: 354 PKKDEDEEEEEEVVVVGRNGAGVGAMNANGEAVGEVDEDDDDD 396


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,971
Number of Sequences: 429
Number of extensions: 9126
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 686
length of database: 140,377
effective HSP length: 62
effective length of query: 624
effective length of database: 113,779
effective search space: 70998096
effective search space used: 70998096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)