Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001010-TA|BGIBMGA001010-PA|IPR002557|Chitin binding
Peritrophin-A
         (241 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    30   0.018
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.5  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.5  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    21   8.5  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 29.9 bits (64), Expect = 0.018
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 78  CHRNERIADPSVPGCKGYILCIPNKSRFQGIKFQCSGNTIFNGYTRTCSAPTKYRC 133
           C +   + DPS   C  Y  C+ + S+   I+ +C+   +++     C+ P   +C
Sbjct: 443 CTKEGIVRDPS--DCSVYYTCVSDGSKLVSIQRKCNHGLVYDLELNICNYPQVVQC 496


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 180 KFSVTQDSVPVKATYF 195
           K   T D+VP+  TYF
Sbjct: 263 KIPTTSDAVPLIGTYF 278


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 180 KFSVTQDSVPVKATYF 195
           K   T D+VP+  TYF
Sbjct: 263 KIPTTSDAVPLIGTYF 278


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 5/14 (35%), Positives = 10/14 (71%)

Query: 28  PNNKVRLCEGDNII 41
           P   +++CEGD ++
Sbjct: 172 PGPSIQVCEGDKVV 185


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 5/14 (35%), Positives = 10/14 (71%)

Query: 28  PNNKVRLCEGDNII 41
           P   +++CEGD ++
Sbjct: 172 PGPSIQVCEGDKVV 185


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 98  CIPNKSRFQGIKFQCSGNTIFNGYTRTCSAP 128
           C P+   F G    C G++    Y ++   P
Sbjct: 10  CNPDSELFPGFGSTCGGSSSSMAYLKSAPYP 40


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 3   ELIVNSAIAYRTTNFDCGPYGFIC 26
           E +++  +   T N+  G  GF+C
Sbjct: 97  EFLLSENLVLVTVNYRLGMLGFLC 120


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,287
Number of Sequences: 317
Number of extensions: 3480
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 241
length of database: 114,650
effective HSP length: 55
effective length of query: 186
effective length of database: 97,215
effective search space: 18081990
effective search space used: 18081990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)