Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001010-TA|BGIBMGA001010-PA|IPR002557|Chitin binding
Peritrophin-A
         (241 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ...    31   0.53 
At1g60640.1 68414.m06826 expressed protein                             29   2.1  
At1g30780.1 68414.m03763 F-box family protein                          29   2.1  
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro...    29   2.8  
At2g21930.1 68415.m02605 F-box family protein contains F-box dom...    28   4.9  
At1g69360.1 68414.m07960 expressed protein                             28   4.9  
At2g40610.1 68415.m05009 expansin, putative (EXP8) similar to ex...    28   6.5  

>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 536

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 146 FNENRRIDTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQDSVPVKATYFCPSRPVVGEN 205
           +  +  +DT Q NL+  N E+P   P   E  N  FS  +  +P++ +   PS P   E 
Sbjct: 104 WENSTEMDTLQNNLQFLNFEDPLTSP---EFSNGFFSQERQCLPLRTSRRSPSLP---EF 157

Query: 206 SVR-CTIFSNQFC 217
            V+ C  F+  FC
Sbjct: 158 PVKICHYFNKGFC 170


>At1g60640.1 68414.m06826 expressed protein
          Length = 340

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 147 NENRRIDTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQDSVPVKATYFCPSRPVVGENS 206
           ++N   D Y G L+  +     ++P   E  NY       S  V    +CP+   + EN+
Sbjct: 71  DDNSDADDYGGTLEKMSMNRFLEEPPEEEEENYILGCMIQSKSVYKCRYCPTVVCLNENT 130

Query: 207 VRCTIFSNQ 215
           ++  + S +
Sbjct: 131 MQAHVSSKK 139


>At1g30780.1 68414.m03763 F-box family protein 
          Length = 482

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 87  PSVPGCKGYILCIPNKSRFQGIKFQCSGNTIFNGYTRTCSAPTK 130
           PS P       C+  KS    ++F  S  T   G  R C+ P+K
Sbjct: 142 PSTPSIPQVFPCLRFKSNLLRVEFWVSSGTAVKGKDRFCNRPSK 185


>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
           protein / ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to Dead Ringer Protein Chain A
           Dna-Binding Domain (GI:6573608), Arid-Dna Complex
           (GI:20150982) from [Drosophila melanogaster]; contains
           Pfam profiles PF00505: HMG (high mobility group) box,
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 337

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 153 DTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQDSVPVKA 192
           +T +G  K ++S+  + KP   +   Y F V + SV +KA
Sbjct: 196 ETKRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKA 235


>At2g21930.1 68415.m02605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 335

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 48  PPNTVCNEDSGDVCENTVNY 67
           PP+ +C+ED+ D+C N V Y
Sbjct: 154 PPHCLCHEDTPDLCINGVLY 173


>At1g69360.1 68414.m07960 expressed protein
          Length = 896

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 133 CPLLNSTKN-GLELFNENRRIDTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQDSVPVK 191
           CP    +K  G  +F E+ R D+   +L  +NS       +P++C        QDSVPV 
Sbjct: 172 CPPYEQSKEVGENIFFESHRNDSSGSSLLMKNSNGFTDLNEPVQC--------QDSVPVS 223

Query: 192 AT 193
           ++
Sbjct: 224 SS 225


>At2g40610.1 68415.m05009 expansin, putative (EXP8) similar to
           expansin 2 GI:7025493 from [Zinnia elegans];
           alpha-expansin gene family, PMID:11641069
          Length = 253

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 19  CGP-YGFICEPNNKVRLCEGDNIIGPAF-LCPPNTVCNEDSGDVCENTVNYID 69
           CG  Y   C  N+  R C G  I   A   CPPN   + D+G  C   + + D
Sbjct: 79  CGACYEMKC--NDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFD 129


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.138    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,727,355
Number of Sequences: 28952
Number of extensions: 308131
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 7
length of query: 241
length of database: 12,070,560
effective HSP length: 79
effective length of query: 162
effective length of database: 9,783,352
effective search space: 1584903024
effective search space used: 1584903024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)