GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001010-TA|BGIBMGA001010-PA|IPR002557|Chitin binding
Peritrophin-A
         (241 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    30   1.5  
05_07_0193 - 28319783-28320211,28320798-28320925,28321543-283218...    29   2.6  
04_04_0261 + 24007790-24009098,24009191-24011118                       28   5.9  
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724...    28   7.8  

>11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,
            7674684-7674708,7675041-7675486,7676643-7676862,
            7677609-7678459,7678697-7679555
          Length = 1121

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 73   NKAVRCHRNERIADPSVPGCKGYILCIPNKSRFQGIKFQCSGNTIFNGYTRTCSAPTKYR 132
            N    C     +++P  PGC G   C   +   +  K  C   T+   + +     T+Y 
Sbjct: 1032 NHLANCDNESVVSEPGAPGCHGLFPCWKTEKSKRRKKKACPLQTLLKSFVQR-RFKTRYS 1090

Query: 133  C 133
            C
Sbjct: 1091 C 1091


>05_07_0193 -
           28319783-28320211,28320798-28320925,28321543-28321888,
           28322386-28322454
          Length = 323

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 65  VNYIDPDFNKAVRCHRNERIADPSVPGCKGYILCIPNKSRF 105
           V+++D D N A   H  +   DP + GC     C+    +F
Sbjct: 89  VHHVDKDINTAKSSHVTDFSQDPLIKGCDPSHTCVIENKKF 129


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 106  QGIKFQCSGNTIFNGYTRTCSAPTKYRCPLLNSTKNGLE 144
            QG +FQ  G++ F G    C  P   RC   N+    LE
Sbjct: 1002 QGGQFQTFGSSSFEGNAALCGKPLSIRCNGSNAGPPSLE 1040


>01_06_1309 -
           36170947-36171077,36171227-36172198,36172285-36172413,
           36172535-36172779,36172904-36173055,36173202-36173306
          Length = 577

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 87  PSVPGCKGYILCIPNKSRFQGI--KFQCSGNTIFNGYTRTCSAPTKYRCPLLNSTKNGLE 144
           PS PG   Y+L  P  +   G       +G   +   +   +A      P+L  T   L 
Sbjct: 279 PSYPGATFYMLAAPYSTAMSGTFDNTTVAGILEYEDPSSHSTAAFNKNLPVLRPT---LP 335

Query: 145 LFNENRRIDTYQGNLKN-RNSENPAQKPKPIECRNYKFSVTQDSVPVKATYFC 196
             N+   +  Y   L++   +E PA  P+ ++ R + F+V   + P      C
Sbjct: 336 QINDTSFVSNYTAKLRSFATAEYPANVPQQVDTR-FFFTVGLGTHPCAVNGTC 387


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,040,442
Number of Sequences: 37544
Number of extensions: 354426
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 5
length of query: 241
length of database: 14,793,348
effective HSP length: 80
effective length of query: 161
effective length of database: 11,789,828
effective search space: 1898162308
effective search space used: 1898162308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)