GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001010-TA|BGIBMGA001010-PA|IPR002557|Chitin binding
Peritrophin-A
         (241 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)                  31   0.65 
SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013)              29   2.6  
SB_34532| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           29   2.6  
SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         29   4.6  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_16570| Best HMM Match : Metallothio_Pro (HMM E-Value=8.2)           29   4.6  
SB_59041| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08)                 28   8.0  

>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 25   ICEPNNKVRLCEGD-NII-GPAFLCPPNTVCNEDSGDVCENTVNYIDPDFNKAVRCHRNE 82
            +CE  N V +C+ + N+      +C  N    E++ +VCEN +N  + + N    C  NE
Sbjct: 3437 VCE--NNVNVCKNNVNMCKNNVNVCENNVNVCENNENVCENNLNVCENNLNV---CENNE 3491

Query: 83   RIADPSVPGCKGYILC 98
             + + +   C+  + C
Sbjct: 3492 NVCENNENVCENNLTC 3507



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 25   ICEPNNKVRLCEGDNIIGPAFLCPPNTVCNEDSGDVCENTVNYIDPDFNKAVR----CHR 80
            +CE  N V +C+ +       +C  N    E++ +VCEN VN  + + N        C  
Sbjct: 3381 VCE--NNVNVCKNN-----MDMCKNNVNVCENNVNVCENNVNVCENNENVCENNLNVCEN 3433

Query: 81   NERIADPSVPGCKGYI-LCIPNKSRFQGIKFQCSGN 115
            NE + + +V  CK  + +C  N +  +     C  N
Sbjct: 3434 NENVCENNVNVCKNNVNMCKNNVNVCENNVNVCENN 3469


>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
          Length = 327

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 98  CIPNKSRFQGIKFQCSGNTIFNGYTRTCSAPTK-YRCPL-LNSTKNGLELFNENRRIDTY 155
           C P+   F G    CS N I N +T  C+   K  RC + + S  N     N N    T 
Sbjct: 79  CFPSPCLFNG---SCSPNFINNSFTCNCTGGYKGARCEIGMQSNNNN----NSNNNNSTS 131

Query: 156 QGNLKNRNSEN 166
             N   RN+ N
Sbjct: 132 NSNSSTRNNNN 142


>SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 25  ICEPNNKVRLCEG-DNIIGPAFLCPPNTVCNEDSGDVCENTVNYIDPDFNKAVRCHRNER 83
           +CE N  V  CE  +N+     +C  N    +++ +VCEN  N  + + N    C  N  
Sbjct: 29  VCENNENV--CENNENVNNNVNVCKNNVNMCKNNVNVCENNENVCENNENV---CENNVN 83

Query: 84  IADPSVPGCKGYILCIPNKSRFQGIKF 110
           + + S   C+       N     G+ +
Sbjct: 84  VCENSENVCENSEKVCENNENVAGVNY 110



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 29  NNKVRLCEGD-NII-GPAFLCPPNTVCNEDSGDVCENTVNYIDPDFNKAVR----CHRNE 82
           NN V +C+ + N+      +C  N    E++ +VCEN VN  +   N        C  NE
Sbjct: 44  NNNVNVCKNNVNMCKNNVNVCENNENVCENNENVCENNVNVCENSENVCENSEKVCENNE 103

Query: 83  RIADPSVPG 91
            +A  +  G
Sbjct: 104 NVAGVNYGG 112


>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 57  SGDVCENTVNY-IDPDFNKAVRCHRNERIADPSVPGCKGYILCIPNKSRFQGIKFQCSGN 115
           +G +C  TV   I  DF K      +    DP    C+G+I C    + ++     C G 
Sbjct: 59  TGAICTVTVTADIHDDFCKY---KPDGEYRDP-YDACRGFIHCHNYNASYK----PCPGG 110

Query: 116 TIFNGYTRTCSAPTKYRCPLLN 137
            ++N  T+ C  P    CP+ N
Sbjct: 111 LLYNEKTKQCDWPRNVDCPMGN 132


>SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013)
          Length = 898

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 50  NTVCNEDSGDVCENTVNYIDPDFNKAVRCHRNER 83
           N +C E SGDV    +  I  + NKA+  HR  R
Sbjct: 599 NVMCEELSGDVKLQQITLIKGNINKALEHHRQVR 632


>SB_34532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 25  ICEPNNKVRLCEGDNIIGPAFLCPPNTVCNED-SGDVCEN--TVNYIDPDFNKAVRCHRN 81
           ICE +  V +CEGD  +      P  T+C+ D S  +C+   +V   + D + A+ C  +
Sbjct: 28  ICEGDPSVTMCEGDPSVTMCEGDPSVTMCDGDPSVTMCKGDPSVTMCEGDPSVAM-CEGD 86

Query: 82  ERIA----DPSVPGCKG 94
             +A    +PSV  C+G
Sbjct: 87  PSVAMCEGNPSVTMCEG 103



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 25 ICEPNNKVRLCEGDNIIGPAFLCPPNTVCNED-SGDVCEN--TVNYIDPDFNKAVRCHRN 81
          +CE +  V +CE D  +      P  T+C  D S  +CE   +V   + D      C   
Sbjct: 1  MCEGDPSVTMCESDPSVAMCEGDPSVTICEGDPSVTMCEGDPSVTMCEGD-PSVTMCD-- 57

Query: 82 ERIADPSVPGCKG 94
              DPSV  CKG
Sbjct: 58 ---GDPSVTMCKG 67



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 15 TNFDCGPYGFICEPNNKVRLCEGDNIIGPAFLCPPNTVCNED-SGDVCEN--TVNYIDPD 71
          T  +  P   +CE +  V +CEGD  +      P  T+C  D S  +C+   +V     D
Sbjct: 9  TMCESDPSVAMCEGDPSVTICEGDPSVTMCEGDPSVTMCEGDPSVTMCDGDPSVTMCKGD 68

Query: 72 FNKAVRCHRNERIA----DPSVPGCKG 94
                C  +  +A    DPSV  C+G
Sbjct: 69 -PSVTMCEGDPSVAMCEGDPSVAMCEG 94


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 99  IPNKSRFQGIKFQCSGNTIFNGYTRTCSAPTKYRCPLLNSTKNGLELFNENRRIDTYQGN 158
           IP     + I+ +   N+I      TC   T   CP++          N N      Q N
Sbjct: 651 IPESGCARQIRHREYNNSIIYVQRDTCDGLTS--CPVIKDETRTNNSNNNNSNHTQQQPN 708

Query: 159 LKNRNSENPAQKPK 172
           + N+NS    QK K
Sbjct: 709 INNKNSHTQQQKQK 722


>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 149 NRRIDTYQGNLKNRNSENPAQKPKP 173
           N+ ++T++ N++NR    P + PKP
Sbjct: 382 NQLLNTFRNNIRNRKDSMPPRPPKP 406


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 50   NTVCNEDSGDVCENTVNYIDPDFNKAVRCHRNE--------RIADPSVPGCKG 94
            N VCN+ +G+   N  +Y  P  N+ ++C+  E        R++D   P  KG
Sbjct: 2015 NPVCNKTTGECYCNPYHYRSPKGNECLKCNCEEIGSLSLQCRVSDGQCPCIKG 2067


>SB_16570| Best HMM Match : Metallothio_Pro (HMM E-Value=8.2)
          Length = 85

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 34 LCEGDNIIGPAFLCPPNT-VCNEDSGDV--CENTVNYIDPDFNKAVRCHRNERIAD 86
          LC+ D+    A  C   + +C+ D  D   C +T    D D N A+RC     + D
Sbjct: 21 LCDRDH--NDALRCSSTSALCDRDHNDALRCSSTSALCDRDHNDALRCSSTSALCD 74


>SB_59041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 171 PKPIECRNYKFSVTQDSVP---VKATYFCPSRPVVGENSVRCTIFSNQFCITLERDSE 225
           PKP+  R ++ SVTQ+ V    VK+ +   S   VG N    T      CI +  +S+
Sbjct: 3   PKPVPARGHQASVTQEKVTQGVVKSFFIDQSGMAVGRNFRLSTNLCLFLCIYMVFNSD 60


>SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08)
          Length = 240

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 132 RCPLLNSTKNGLELFNENRRIDTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQDSVPVK 191
           R  L++       LFN   R   +Q     R SE   Q+   +    Y  +  ++  PVK
Sbjct: 61  RVILIHDAGRHFLLFNVLLRTGRWQNQ---RQSEPSRQERDFLSINEYNHTGCREDCPVK 117

Query: 192 ATYFCPSRPVVGENSVRC 209
           ++   P   V  +N  RC
Sbjct: 118 SSSCDPKMQVFSQNECRC 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.138    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,952,916
Number of Sequences: 59808
Number of extensions: 467609
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 25
length of query: 241
length of database: 16,821,457
effective HSP length: 80
effective length of query: 161
effective length of database: 12,036,817
effective search space: 1937927537
effective search space used: 1937927537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)