GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001010-TA|BGIBMGA001010-PA|IPR002557|Chitin binding
Peritrophin-A
         (241 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    26   0.27 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.83 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.83 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.7  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 132 RCPLLNSTKNGLELFNENRRIDTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQDSVPVK 191
           R P + S+ +   + N N     Y+ N  N+ + N     K +  +NY  ++ Q  VPV 
Sbjct: 77  REPKIISSLSNKTIHNNNN----YKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPVP 132

Query: 192 ATY-FCPSRPV 201
             Y   P RP+
Sbjct: 133 VYYGNFPPRPM 143


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 144 ELFNENRRIDTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQDSVPVKATYFC---PSRP 200
           E   E + I +   N K  N  N     K +  +NY  ++ Q  +PV    +C   P RP
Sbjct: 74  ERSKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQ--IPVPVPIYCGNFPPRP 131

Query: 201 V 201
           +
Sbjct: 132 M 132


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 147 NENRRIDTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQDSVPVKATYFC---PSRPV 201
           + N +   Y  N  N N+ N     K +  +NY  ++ Q  +PV    +C   P RP+
Sbjct: 319 SNNYKYSNYN-NYNNYNNNNYNNYNKKLYYKNYIINIEQ--IPVPVPIYCGNFPPRPM 373


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 152 IDTYQGNLKNRNSENPAQKPKPIECRNYKFSVTQD 186
           ID +  N ++   +   +  K  +C NY   +T D
Sbjct: 154 IDLFNANARSVVEKMRKENGKEFDCHNYMSELTVD 188


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 149 NRRIDTYQGNLK 160
           N RID+Y+ NLK
Sbjct: 138 NDRIDSYKSNLK 149


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,216
Number of Sequences: 429
Number of extensions: 4572
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 241
length of database: 140,377
effective HSP length: 56
effective length of query: 185
effective length of database: 116,353
effective search space: 21525305
effective search space used: 21525305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)