Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001009-TA|BGIBMGA001009-PA|IPR008940|Protein
prenyltransferase
         (820 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    31   0.038
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    31   0.038
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    31   0.038
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    31   0.038
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    31   0.038
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    31   0.038
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    31   0.038
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    31   0.038
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    31   0.038
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    31   0.038
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.47 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    26   1.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   3.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   7.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   7.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   7.6  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 27  EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 86

Query: 701 N 701
           N
Sbjct: 87  N 87


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 27  EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 86

Query: 701 N 701
           N
Sbjct: 87  N 87


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 27  EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 86

Query: 701 N 701
           N
Sbjct: 87  N 87


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 27  EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 86

Query: 701 N 701
           N
Sbjct: 87  N 87


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 260 EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 319

Query: 701 N 701
           N
Sbjct: 320 N 320


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 260 EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 319

Query: 701 N 701
           N
Sbjct: 320 N 320


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 260 EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 319

Query: 701 N 701
           N
Sbjct: 320 N 320


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 260 EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 319

Query: 701 N 701
           N
Sbjct: 320 N 320


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 260 EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 319

Query: 701 N 701
           N
Sbjct: 320 N 320


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 642 ERLLSALCNCYEYQEEDVKE-KIRSAAESILKHGETLEQRDESRDQRSPVSQKLSATALS 700
           E+LL    +C  Y     +E K+        K+GET ++R  +R +R    +    ++LS
Sbjct: 249 EKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLS 308

Query: 701 N 701
           N
Sbjct: 309 N 309


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 594 LIPNIYIPEPSVMEEIIRTLEVAGAGDR 621
           +I NIYIPEP  +E I +   V+ A  R
Sbjct: 646 IIQNIYIPEPQDIENIFKYGYVSHANQR 673


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 634 HAKRTKLVERLLSALCNCYEYQEEDVKEKIRSAAESILKHGETLEQRDESRDQRSPVSQK 693
           H ++ KL+E   S     Y    E  ++  ++  E   K+GET ++R   R +R    + 
Sbjct: 256 HNEKEKLLEERTSR--ERYSRSREREQKSYKNERE-YRKYGETSKERSRDRTERERSKEP 312

Query: 694 LSATALSN 701
              ++LSN
Sbjct: 313 KIISSLSN 320


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 555 NNNYKLVGDAYKESIYYRHLV 575
           NNNYK   + Y + +YY++ +
Sbjct: 326 NNNYKYNYNNYNKKLYYKNYI 346


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 537 DHLQDINMAERVH-ALLMKNNNYKLVGDAYKESIYYRHLVTVACRHAPFEKATEYLDTLI 595
           D L+++N A R++   L K     L   A ++    RHL     ++    + T Y+ TL 
Sbjct: 120 DLLENVNNAARINWEYLDKYKPTPLGAVATEKMFVARHLAETP-KNTSAVRYTHYIGTLA 178

Query: 596 PNIYIPEPSVMEEIIRTLEVAGAGDRLAQ 624
            N  I E     +   T  +A +GD L +
Sbjct: 179 TNDNILESISYVKDDGTEGIAKSGDVLVE 207


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 585 EKATEYLDTLIPNIYIPEPSVMEEIIRTLEVAGAGDRLAQAWSQIIVFGHAKRTKLV 641
           E+  + L+ +    + PE +V+EE++  L +      LA +   II+ G   + K +
Sbjct: 24  EETQQALELINLENFFPEENVVEELLSPLTLNRITHILANS-PAIIILGQDSKAKAI 79


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 634 HAKRTKLVERLLSALCNCYEYQEEDVKEKIRSAAESILKHGETLEQRDESRDQRSPVSQK 693
           H ++ KL+E   S     Y    E  ++  ++  E   K+G+T ++R   R +R    + 
Sbjct: 245 HNEKEKLLEERTSR--KRYSRSREREQKSYKNERE-YRKYGKTSKERSRDRMERERSKEP 301

Query: 694 LSATALSN 701
              ++LSN
Sbjct: 302 KIISSLSN 309


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,409
Number of Sequences: 429
Number of extensions: 9994
Number of successful extensions: 39
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 17
length of query: 820
length of database: 140,377
effective HSP length: 63
effective length of query: 757
effective length of database: 113,350
effective search space: 85805950
effective search space used: 85805950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)