GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001009-TA|BGIBMGA001009-PA|IPR008940|Protein
prenyltransferase
         (820 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    29   0.17 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   3.7  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 25  ESQKTPQSGASSDGISPPVRIQRGPTD 51
           ++ KTP+SG  SDG+     I R P+D
Sbjct: 428 QTTKTPESGNESDGVCTKEGIVRDPSD 454


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 114 IWDPPLRKKTPYYNADPKIEAFSPKPI 140
           ++   +R++ PYY ADP++++   + I
Sbjct: 125 VFSKQIRQEKPYYIADPEVDSLMVQAI 151


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 326  DRWTDRTDVGIIIKKSDFV 344
            D+W    D+G+I  KS+F+
Sbjct: 2134 DQWVSFDDIGMIRHKSEFI 2152


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,607
Number of Sequences: 317
Number of extensions: 7091
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 820
length of database: 114,650
effective HSP length: 62
effective length of query: 758
effective length of database: 94,996
effective search space: 72006968
effective search space used: 72006968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)