Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001009-TA|BGIBMGA001009-PA|IPR008940|Protein
prenyltransferase
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 32 0.37
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 31 0.64
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 30 1.5
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 29 2.6
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 3.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 4.5
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 4.5
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 7.9
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 7.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 7.9
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 31.9 bits (69), Expect = 0.37
Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 634 HAKRTKLVERLLSALCNCYEYQEEDVKEKIRSAAESILKHGETLEQRDESRDQRSPVSQK 693
+AK + ++ AL Y ++ D E + + + + K E+ + Q S+
Sbjct: 161 YAKSAHSTKTVVDALYKSYLEKQSDYSELLDNYKKQLNKASESCK----GNYQACIESRS 216
Query: 694 LSATALSNIIELLSDVSDKSSERWTSVETALNKLKQEQATGVPSKPESISTLAEKAASMG 753
T+L ++IE + + E SVE+ ++ L+ +++T S + +K+++ G
Sbjct: 217 TLITSLESLIEEQKKLLSEEEESLKSVESIISNLENKESTTATSTLTD-AGFGDKSSTAG 275
Query: 754 KLEIAATA 761
K + T+
Sbjct: 276 KHNVETTS 283
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/73 (20%), Positives = 34/73 (46%)
Query: 709 VSDKSSERWTSVETALNKLKQEQATGVPSKPESISTLAEKAASMGKLEIAATAVAYLAEC 768
+S +E+WT V +N+L+ + S P++ + + G I ++ +C
Sbjct: 86 LSPMQAEQWTKVHNHINELQGVLSVNCSSSPDAAIRVIYDSEITGPRSIMKEILSMGVKC 145
Query: 769 GFEEAAGASARVL 781
F+ +++R+L
Sbjct: 146 TFQPVDSSTSRIL 158
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 104 DEHADLFTTRIWDPPLRKKTPYYNADPKIEAFSPKPIYNDESKVTEE 150
D+ + T++ D +++K+P + PK+ S K Y DE K+ +E
Sbjct: 548 DDELPVLATKLVDNVIKEKSPL-SLTPKVVVPSHKETYTDEKKLIDE 593
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 496 ERGPRNNILSKILTDLESRERLEVNEPTDTNFFITAMGVCSDH--LQDINMAERVHA 550
+RGP+ + ILT ER+ V +P N FI + D + +N+ VHA
Sbjct: 135 QRGPQIQWVENILTHKAEAERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIVHA 191
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 28.7 bits (61), Expect = 3.4
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 673 HGETLEQRDESRDQRSPVSQKLSATALSNIIELLSDVSDKSSERWTSVETALNKLKQEQA 732
H EQ S +P + A E+L DV + ER + ++L +E
Sbjct: 29 HRSVREQESSSEVHANPEPDNQDSNA-----EILIDVPKE--ERQKRKQELKDQLLKENE 81
Query: 733 TGVPSKPESISTLAEKAASMGKLEIAATAVAYLAECGFEEAAGASARVLGAMLNRPEEEV 792
+ SK + L + + K E A+ +A LAE + + +S++ LG E+
Sbjct: 82 GSISSKKKK--RLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSSKNLGKQATAKEKLK 139
Query: 793 RALLQEPAG 801
++LL+E G
Sbjct: 140 KSLLEEKLG 148
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 362 ELLWDKGHVLYKDRDGKLKAWQEAERAYELSQEAIEKGIPLSTGVYNALLGCIG 415
+LL++ VL KD D KL QE E+ E ++ PL T + N L IG
Sbjct: 1270 QLLYESNSVLRKDNDAKLGKIQELEKEVEKLNASLN---PLQTEI-NELKAEIG 1319
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 283 GLTVRTRILLRTAYEDRRSSASACVPSVDRRAMETNERVQCCTDRWTDRTD 333
G+ LL + Y R +ASA V S + R + ER C WT R D
Sbjct: 22 GVEFSDLFLLSSGYLRDRENASASVSSKNERMVLNEERQNC----WTKRND 68
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 639 KLVERLLSALCNCYEYQ-EEDVKEKIRSAAESILKHGETLEQRDESRDQRSPVSQKLSAT 697
+LV+RL S + E++ K+ +A E ++ GE E+R+E+ + VS
Sbjct: 164 ELVKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEEREEA--ELEFVSDDEDEE 221
Query: 698 ALSNIIELL-SDVSDKSSE 715
+S++ + L SD S ++SE
Sbjct: 222 EISDLEDWLGSDQSMETSE 240
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 14/69 (20%)
Query: 695 SATALSNIIELL----SDVSDKSSERWTSVETAL--------NKLKQEQATGVPSKPESI 742
SAT LS I+ +L + V + S WT++E A+ +KL+ + A + KP ++
Sbjct: 409 SATGLSEIVSILVASGASVDEVDSSGWTAMEQAVVRGYLHLADKLRTQVA--LSDKPVNL 466
Query: 743 STLAEKAAS 751
TL KA+S
Sbjct: 467 HTLYIKASS 475
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 428 LKSTLMQMNEQGLSPNIETLSACLRSISVWGGGIQLQNLAMQLVAEFREL 477
L+ L + L IE A ++VW G + L+NL ++ A FR+L
Sbjct: 2 LEGLLANFLNRLLGEYIENFDATQLKVAVWNGDVTLRNLQLKRSA-FRKL 50
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,233
Number of Sequences: 5004
Number of extensions: 144127
Number of successful extensions: 443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 15
length of query: 820
length of database: 2,362,478
effective HSP length: 79
effective length of query: 741
effective length of database: 1,967,162
effective search space: 1457667042
effective search space used: 1457667042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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