Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001008-TA|BGIBMGA001008-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (540 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    26   0.58 
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    26   0.58 
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    26   0.58 

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 408 NKSPRVMYMVSLTLVIIIRTIMLFTHSYLGMVFVAVAMGFTKGIRTVYMNLI 459
           NKS  + + +  TL+III    L       +   A+  GFT    T Y+++I
Sbjct: 115 NKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLSALLEGFTLYHTTAYLHII 166


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 408 NKSPRVMYMVSLTLVIIIRTIMLFTHSYLGMVFVAVAMGFTKGIRTVYMNLI 459
           NKS  + + +  TL+III    L       +   A+  GFT    T Y+++I
Sbjct: 115 NKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLSALLEGFTLYHTTAYLHII 166


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 408 NKSPRVMYMVSLTLVIIIRTIMLFTHSYLGMVFVAVAMGFTKGIRTVYMNLI 459
           NKS  + + +  TL+III    L       +   A+  GFT    T Y+++I
Sbjct: 115 NKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLSALLEGFTLYHTTAYLHII 166


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,863
Number of Sequences: 317
Number of extensions: 3857
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 540
length of database: 114,650
effective HSP length: 60
effective length of query: 480
effective length of database: 95,630
effective search space: 45902400
effective search space used: 45902400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)