GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001008-TA|BGIBMGA001008-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (540 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    29   0.098
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    29   0.098
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.39 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   3.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   6.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   8.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   8.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 29.1 bits (62), Expect = 0.098
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 171 WRYAVLILSAICLHSLLAACLLRPAKWYLKDPPLSEELVPLNKE 214
           W+Y  ++L  + L     A L+  A   L+ P L ++ VP++K+
Sbjct: 511 WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAPTLYDDRVPIDKK 554


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 29.1 bits (62), Expect = 0.098
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 171 WRYAVLILSAICLHSLLAACLLRPAKWYLKDPPLSEELVPLNKE 214
           W+Y  ++L  + L     A L+  A   L+ P L ++ VP++K+
Sbjct: 511 WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAPTLYDDRVPIDKK 554


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 0.39
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 171 WRYAVLILSAICLHSLLAACLLRPAKWYLKDPPLSEELVPLN 212
           W+Y  ++L  I L     AC+L      L+ P L +   P++
Sbjct: 539 WKYVAMVLDRIFLWIFTVACVLGTVLIILQAPSLYDTTKPID 580


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 171 WRYAVLILSAICLHSLLAACLLRPAKWYLKDPPLSEELVPLN 212
           W+Y  ++L  + L     A ++  A   L+ P L ++ +P++
Sbjct: 506 WKYVAMVLDRLFLWIFTLAVVVGTAGIILQAPTLYDDRIPID 547


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 8   KVPPDGGYGWVITFAYALNNVVVLPLISSFGLV 40
           +V P  G GW++   Y L     LPL  SF +V
Sbjct: 126 EVTPRDGLGWLLLMLYLL--FATLPLRLSFCVV 156


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 151 TGLGAIYMPLLMSTLIY 167
           + LG+ ++PLL+ +L+Y
Sbjct: 200 SSLGSFFIPLLLMSLVY 216


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 61  LNHSIGMLLSFFGGPLLRRF 80
           + +S  +L   +GGPLLR F
Sbjct: 214 ITNSTPLLKKLYGGPLLRIF 233


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 61  LNHSIGMLLSFFGGPLLRRF 80
           + +S  +L   +GGPLLR F
Sbjct: 229 ITNSTPLLKKLYGGPLLRIF 248


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,065
Number of Sequences: 429
Number of extensions: 4773
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 9
length of query: 540
length of database: 140,377
effective HSP length: 61
effective length of query: 479
effective length of database: 114,208
effective search space: 54705632
effective search space used: 54705632
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)