GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001007-TA|BGIBMGA001007-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (740 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   3.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   3.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   3.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   3.3  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   7.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   7.5  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   10.0 

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 69  NIHSALNSCVGLANG-PVFRTFTYRQVSMTGAILVVSALMLTVFANSFVTYIITFSLLYG 127
           NI+      V    G  VFR    ++ S  G++     L +TV     V Y++TF ++ G
Sbjct: 27  NIYGGSTRTVQETKGWDVFRDPPIKEES--GSMANQKCLEITVKILKIVAYLVTFVIVLG 84

Query: 128 AG 129
           +G
Sbjct: 85  SG 86


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 69  NIHSALNSCVGLANG-PVFRTFTYRQVSMTGAILVVSALMLTVFANSFVTYIITFSLLYG 127
           NI+      V    G  VFR    ++ S  G++     L +TV     V Y++TF ++ G
Sbjct: 27  NIYGGSTRTVQETKGWDVFRDPPIKEES--GSMANQKCLEITVKILKIVAYLVTFVIVLG 84

Query: 128 AG 129
           +G
Sbjct: 85  SG 86


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 69  NIHSALNSCVGLANG-PVFRTFTYRQVSMTGAILVVSALMLTVFANSFVTYIITFSLLYG 127
           NI+      V    G  VFR    ++ S  G++     L +TV     V Y++TF ++ G
Sbjct: 27  NIYGGSTRTVQETKGWDVFRDPPIKEES--GSMANQKCLEITVKILKIVAYLVTFVIVLG 84

Query: 128 AG 129
           +G
Sbjct: 85  SG 86


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 69  NIHSALNSCVGLANG-PVFRTFTYRQVSMTGAILVVSALMLTVFANSFVTYIITFSLLYG 127
           NI+      V    G  VFR    ++ S  G++     L +TV     V Y++TF ++ G
Sbjct: 27  NIYGGSTRTVQETKGWDVFRDPPIKEES--GSMANQKCLEITVKILKIVAYLVTFVIVLG 84

Query: 128 AG 129
           +G
Sbjct: 85  SG 86


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 19 PPDGGWGWMVVIAAGLSNLSALPI 42
          P  GG G+ +  A+G  + +ALPI
Sbjct: 29 PEAGGGGFWLAAASGAPHPAALPI 52


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 19 PPDGGWGWMVVIAAGLSNLSALPI 42
          P  GG G+ +  A+G  + +ALPI
Sbjct: 29 PEAGGGGFWLAAASGAPHPAALPI 52


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 169 YVITGLYNAFGETGAILIISGV 190
           Y++  L+N FG    I+  SGV
Sbjct: 260 YILFALFNTFGTILLIMTCSGV 281


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,888
Number of Sequences: 317
Number of extensions: 5904
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 740
length of database: 114,650
effective HSP length: 62
effective length of query: 678
effective length of database: 94,996
effective search space: 64407288
effective search space used: 64407288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)