Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001007-TA|BGIBMGA001007-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1348 + 25945444-25945551,25946411-25946607,25946732-259468... 34 0.47
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 33 0.62
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 33 0.82
08_02_1325 - 26146775-26147247,26147397-26148579 31 2.5
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 31 4.4
01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728 30 7.7
>07_03_1348 +
25945444-25945551,25946411-25946607,25946732-25946804,
25947003-25947092,25947410-25947465,25947559-25947738,
25947813-25948006,25948095-25948234,25948324-25948466,
25948549-25948697,25948784-25949148,25949264-25949368
Length = 599
Score = 33.9 bits (74), Expect = 0.47
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 295 DGSNVNSHLASKKPSMTNLLENRSRKSSTLYLNESKKNSSANLGALAQERDPLKPKRKTS 354
D + N S M +LLE+ Y NE +++ + + + +TS
Sbjct: 353 DKKDDNDMSESSMSGMASLLEDLDDLIVDPYENEEEEDQDLREQTEQIDVENKQNSSQTS 412
Query: 355 ITTRDDLIPESEIEDCPTLKAPQDLKAE 382
+ ++P++++EDCP K+ +D E
Sbjct: 413 MEVTSQMVPDNKMEDCPNDKSTEDNNME 440
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 33.5 bits (73), Expect = 0.62
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 591 LAATDISMRFCTPFV-AGKIGWENNTF-----FLVGVMTMAMGRVVLAYSQASWVLTSVA 644
L T +SM + A GW N+T+ LV M A+G +V+ + ++L
Sbjct: 72 LQETIVSMALVGAIIGAAGGGWINDTYGRRKSTLVADMLFALGSLVMCAAGGPYILILGR 131
Query: 645 VIIGFGKGLRTVFMALVIPTYVPLDKLPG--ATGLQLITAG 683
+++G G G+ +V + I P + G +T + +IT G
Sbjct: 132 LLVGLGVGIASVTAPVYIAEAAPSEIRGGLVSTNVLMITGG 172
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 33.1 bits (72), Expect = 0.82
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 303 LASKKPSMTNLLENRSRKSSTLYLNESKKNSSANLGALAQERDPLKPKRKTSITTRDDLI 362
L K T+ L + S + N+ + N A L L++E D LK K + RD+L
Sbjct: 729 LVDFKSKETDRLVMELKSKSDEFQNQKRCNE-AKLSVLSEEIDQLKAKIENLSNERDNLF 787
Query: 363 PESEIEDCP-TLKAPQDLKAEEKVVVEKIDPKQALVIADKAQKHL 406
E+E +D +D+ +++ + K+ I D+ Q +L
Sbjct: 788 EENEQKDKELAANCQKDMFLQDRDAEIALLNKELASIKDQVQTYL 832
>08_02_1325 - 26146775-26147247,26147397-26148579
Length = 551
Score = 31.5 bits (68), Expect = 2.5
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 427 KYQKDNHSNISFKNNEENEERKYLRDNHSNQSYRTKHRRKSNNFN---FESEVLKQASLK 483
K++K++ + E+N +R+ +D HS + R KH+ K N + + ++ L++A+L+
Sbjct: 20 KHKKESKERRGRERKEKNSDRR--KDKHSKKHKREKHKDKRKNKDDDRYTNQTLEKATLR 77
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 30.7 bits (66), Expect = 4.4
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 421 DGQYGDKYQKDNHSNISFKNNEENEERKYLRDNHSNQSYRTKHRRKSNNFNFESEVLKQA 480
D + + + D+ S K+ E+E+ + D +S H S+N E+ KQA
Sbjct: 1535 DAEKEEGFDMDSESEEDTKSKPESEDHQAKLDEELEES-EEGHVLDSSNKG-ENLKAKQA 1592
Query: 481 SLKLEEYLKEREDDVGKAKI 500
+ +LE+ + E ED+ + I
Sbjct: 1593 TARLEDEMNEAEDEKAQVTI 1612
>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
Length = 316
Score = 29.9 bits (64), Expect = 7.7
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 320 KSSTLYLNESKKNSSA-NLGALAQERDPLKPKRKTSITTRDDLI-PESEIEDCPTLKAPQ 377
KSS+ + ++S S+A +A + P + ++S + ++ PE E E P +K +
Sbjct: 161 KSSSCHASKSSPRSTAPKPEPVADGQHPEPAENESSASAELEVPEPEPEQESEPVVKQEE 220
Query: 378 DLKAEEKVVVE 388
+ K E+K VVE
Sbjct: 221 EQKEEQKAVVE 231
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,942
Number of Sequences: 37544
Number of extensions: 685218
Number of successful extensions: 1748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 7
length of query: 740
length of database: 14,793,348
effective HSP length: 87
effective length of query: 653
effective length of database: 11,527,020
effective search space: 7527144060
effective search space used: 7527144060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -