Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001006-TA|BGIBMGA001006-PA|undefined
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   0.85 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   1.5  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   1.5  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   2.6  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    24   2.6  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    24   3.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    23   4.6  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   6.0  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    23   6.0  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    23   6.0  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    23   8.0  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    23   8.0  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    23   8.0  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    23   8.0  

>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 0.85
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 12 PRKSSGRTQTSPSYAAERNPSNLPVRER-NFSPDRSSVTLGPRP 54
          P +S  R+Q+ P   +  +    P+R+R N+  DR+  + GP P
Sbjct: 21 PERSQRRSQSPPGEQSAYHRERSPLRKRGNYYDDRTRAS-GPYP 63


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 12  PRKSSGRTQTSPSYAAERNPSNLPVRERNFS-PDRSSVTLGPRPKAR 57
           PR   G    SP  + + + S  PVR R+     RSS +  P  ++R
Sbjct: 122 PRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSR 168


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)

Query: 10 LLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGP 52
          LLP   S      P Y+     SN P   R  +P RS+    P
Sbjct: 30 LLPEYDSEEEGALPPYSDHARVSNSPNTHRENNPSRSTDNSSP 72


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 3   VLSGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRER 39
           ++S    +   +   ++  SPSY  + +PS+L V  +
Sbjct: 92  LISASKEITSERKRAKSSVSPSYLTDSSPSDLSVENK 128


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 14/43 (32%), Positives = 17/43 (39%)

Query: 10 LLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGP 52
          LLP   S      P Y+     SN P   R  +P RS+    P
Sbjct: 30 LLPEYDSKEEGALPLYSDHARLSNSPNTHRENNPSRSTDNSSP 72


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 13  RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGP 52
           R+  G T  S   ++   PS LPVR          + LGP
Sbjct: 132 RRDFGMTSMSSITSSTPTPSQLPVRPSTSLSFFDDIPLGP 171


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 4   LSGDACLLPRKSSGRTQTSPSYAA-ERNPSNLPVRERNF 41
           +S D  LLPRK++  + +S S+++   +P++L   E  F
Sbjct: 662 ISHDEDLLPRKNTEESTSSSSFSSLITSPASLQYDENPF 700


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 12  PRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAG 59
           P   +  + T PS AAE +     VR   F+  R+        + + G
Sbjct: 450 PAVPTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGFVAALESRLQKG 497


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 1   MTVLSGDACLLPRKSSGRTQTSPSYAAERNP 31
           M +L GD   LPR +   TQ+  S      P
Sbjct: 180 MNLLRGDVARLPRSTEITTQSDSSPTKRSKP 210


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 12  PRKSSGRTQTSPSYAAERNPSNLP 35
           PRKS+  + TS      +N +NLP
Sbjct: 491 PRKSANISVTSSPIRPSKNENNLP 514


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 2   TVLSGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSP 43
           T +S D+  +P   S    T+P  +   N   LP  +   SP
Sbjct: 131 TNISFDSSAIPNVQSNPNNTAPFPSYSSNSLQLPTNQTADSP 172


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 21  TSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRPFRC 64
           +SP      NP+  P+  RN   +   +    R  +  GR  RC
Sbjct: 396 SSPDSFTNANPTTAPIVSRNAQDNMGMLAYMIRMVSIWGRVVRC 439


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 418

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 5  SGDACLLPRKSSGRTQTSPSYAAERNPSNLP 35
          +G+ CL+ +  +  T++  SY    +  N+P
Sbjct: 15 TGNTCLIQKNVAVSTRSHSSYTGRNSLRNVP 45


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 20  QTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARA 58
           Q S   ++ R  + LP    +    RSSVTL   P + +
Sbjct: 201 QNSSETSSNRTSAYLPGSSTDEQEKRSSVTLASMPSSHS 239


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,416
Number of Sequences: 5004
Number of extensions: 10326
Number of successful extensions: 41
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 15
length of query: 86
length of database: 2,362,478
effective HSP length: 61
effective length of query: 25
effective length of database: 2,057,234
effective search space: 51430850
effective search space used: 51430850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)