Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001006-TA|BGIBMGA001006-PA|undefined
         (86 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49370.1 68416.m05397 calcium-dependent protein kinase, putat...    30   0.22 
At5g63130.1 68418.m07926 octicosapeptide/Phox/Bem1p (PB1) domain...    27   1.2  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    27   1.2  
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id...    27   2.0  
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id...    27   2.0  
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    27   2.0  
At3g19500.1 68416.m02471 ethylene-responsive protein -related co...    26   3.6  
At1g13050.1 68414.m01513 expressed protein                             26   3.6  
At4g19090.1 68417.m02814 hypothetical protein contains Pfam doma...    25   4.7  
At4g11930.1 68417.m01896 hypothetical protein                          25   6.2  
At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    25   8.2  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    25   8.2  
At4g12080.1 68417.m01920 DNA-binding family protein contains a A...    25   8.2  
At4g11450.1 68417.m01843 expressed protein                             25   8.2  
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein...    25   8.2  

>At3g49370.1 68416.m05397 calcium-dependent protein kinase,
          putative / CDPK, putative similar to
          calcium/calmodulin-dependent protein kinase CaMK1
          [Nicotiana tabacum] gi|16904222|gb|AAL30818
          Length = 594

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 5  SGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLG--PRPKARAGRPF 62
          S  A L  R      QTS S +  ++P+   V   N SP +S +  G  P P    GR F
Sbjct: 20 SATAQLPHRSHQNHHQTSSSSSIPQSPATSEVNPYNISPFQSPLPAGVAPSPARTPGRKF 79

Query: 63 R 63
          +
Sbjct: 80 K 80


>At5g63130.1 68418.m07926 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 192

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 8   ACLLPRKSSGRTQTSPSYAAERNPSN 33
           A L P +SS +T++SPS + +R+P +
Sbjct: 107 AVLSPPRSSHKTESSPSSSGDRSPKS 132


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 13  RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRS---SVTLGPRPKARAGRPF 62
           R + GR + SPSY+  R+ S    R R++S DR    S + G R ++ +  PF
Sbjct: 168 RTARGRHK-SPSYSPRRSVSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPF 219


>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 249

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 13  RKSSGRTQT-SPSYAAERNP---SNLPVRERNFSPDRSSVTLGPRPKARA 58
           R+S  R+ + S SY+  R+P       V ER+ SP R   +L PR + R+
Sbjct: 121 RRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKRMDDSLSPRARDRS 170


>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 260

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 13  RKSSGRTQT-SPSYAAERNP---SNLPVRERNFSPDRSSVTLGPRPKARA 58
           R+S  R+ + S SY+  R+P       V ER+ SP R   +L PR + R+
Sbjct: 132 RRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKRMDDSLSPRARDRS 181


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 13  RKSSGRTQT-SPSYAAERNP---SNLPVRERNFSPDRSSVTLGPRPKARA 58
           R+S  R+ + S SY+  R+P       V ER+ SP R   +L PR + R+
Sbjct: 162 RRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKRMDDSLSPRARDRS 211


>At3g19500.1 68416.m02471 ethylene-responsive protein -related
           contains similarity to ethylene-inducible ER33 protein
           [Lycopersicon esculentum] gi|5669656|gb|AAD46413
          Length = 270

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 5   SGDACLLPR--KSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAG 59
           S DAC + +  KSS + +T      E + +  P ++   + ++SSV +    K R G
Sbjct: 105 SNDACTVDKSTKSSTKKRTGTGNGQESDQNRKPGKKGKRNQEKSSVGIAKVRKERLG 161


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 14 KSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRPFR 63
          K+ GR QT P      +PS+ P+      P R    L PR    + RP +
Sbjct: 51 KTRGRHQTEPPETIHESPSSRPL------PLRPEEPLPPRHNPNSARPLQ 94


>At4g19090.1 68417.m02814 hypothetical protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 751

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 3   VLSGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDR 45
           +LS D  + PR+  G    S  + A      L   E+NF  D+
Sbjct: 660 ILSADTSIEPREVKGNHSKSVLFEASSLAKELQRVEKNFGEDK 702


>At4g11930.1 68417.m01896 hypothetical protein 
          Length = 272

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 14  KSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGP 52
           K    T+ SP    E+N + +P ++ +F P++ +V  GP
Sbjct: 188 KEFQETEESPLPVEEKN-NEVPSKDTSFVPEKRNVGPGP 225


>At5g55660.1 68418.m06940 expressed protein similar to unknown
           protein (pir||T08929)
          Length = 778

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 13  RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGR 60
           +KS   + TSP  +++R  +  P +E+  +P +S     P    R G+
Sbjct: 631 KKSDDDSDTSPKASSKRKKTEKPAKEQAAAPLKSVSKEKPVIGKRGGK 678


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 26  AAERNPSNLPVRERNFSPDRSSVTLGPRPKARA 58
           ++ R+PS  PVR    S  RS + L  R  +R+
Sbjct: 518 SSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRS 550


>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 356

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 37  RERNFSPDRSSVTLGPRPKARAGRP 61
           R R + PD + V L P+P + A  P
Sbjct: 94  RPRKYGPDGTVVALSPKPISSAPAP 118


>At4g11450.1 68417.m01843 expressed protein 
          Length = 694

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 4   LSGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPD 44
           +SGDA    ++ S   +TS SY  E +    P    N  PD
Sbjct: 417 MSGDASDTMKQRSQPKRTSQSYDLEASNGTNPWSAANLHPD 457


>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
          contains Pfam domain, PF00098: Zinc knuckle
          Length = 282

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 15 SSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGR 60
          SS     + S ++   PS +P  E   S  +S  ++ P PK    R
Sbjct: 23 SSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKSGTSIAPAPKVTKTR 68


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,976
Number of Sequences: 28952
Number of extensions: 58710
Number of successful extensions: 162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 17
length of query: 86
length of database: 12,070,560
effective HSP length: 65
effective length of query: 21
effective length of database: 10,188,680
effective search space: 213962280
effective search space used: 213962280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)