Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001006-TA|BGIBMGA001006-PA|undefined
(86 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0947 - 29081007-29081047,29081670-29081958,29083044-290834... 29 0.35
10_02_0141 + 5761931-5762020,5762170-5762201,5762453-5762604,576... 28 1.1
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 28 1.1
09_04_0377 + 17086775-17088310 28 1.1
08_02_0415 + 16898549-16898644,16899406-16899678,16899916-168999... 26 3.3
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 26 3.3
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 25 5.7
06_03_1320 - 29292986-29293005,29293222-29293282,29293530-292938... 25 7.5
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 25 7.5
03_05_0019 + 19862171-19863049 25 7.5
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409... 25 10.0
12_01_0512 - 4055074-4055337,4055424-4055727,4055774-4055898,405... 25 10.0
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 25 10.0
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 25 10.0
06_03_1358 - 29548440-29549315 25 10.0
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 25 10.0
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 25 10.0
01_05_0812 + 25444351-25444658,25444967-25445231,25445303-254453... 25 10.0
>03_05_0947 -
29081007-29081047,29081670-29081958,29083044-29083424,
29083935-29084129
Length = 301
Score = 29.5 bits (63), Expect = 0.35
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 9 CLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRPFR 63
C L R+ SG Q A + N+P + P RS + LG + R G FR
Sbjct: 194 CGLQRRGSGEIQVGVRVADDDGNFNIPGPQNLSVPGRSLIELGSVLEDRLGSNFR 248
>10_02_0141 +
5761931-5762020,5762170-5762201,5762453-5762604,
5763688-5763770,5764689-5764766,5764884-5764979,
5765076-5765345
Length = 266
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 19 TQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRP 54
T + P AA +NP N P N + D S ++ RP
Sbjct: 187 TSSVPQQAAAQNPQNAPSPANNANHDSSGLSQQQRP 222
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 17 GRTQTSPSYAAERNPSNLPVRERNFSPDRSSVT 49
G T PSY+A N +N VRER+ R++++
Sbjct: 525 GENGTRPSYSASGNCNNCGVRERSGITARTNIS 557
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 11 LPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRPFR 63
LP +S R SPS R+PS P RN DRS R + R+ P+R
Sbjct: 14 LPGRS--RVSASPSPRRRRSPSRSPSPRRNRRRDRSPSPYRSR-RDRSPSPYR 63
>08_02_0415 +
16898549-16898644,16899406-16899678,16899916-16899996,
16900094-16900369,16900414-16900932
Length = 414
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 5 SGDACLLPRKSSGRTQTSP-SYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARA 58
+G+AC TQ+ P ++A + + ER+FSP SS G P A
Sbjct: 66 AGEACNNADVPPHHTQSPPCNFATDAMAHLIHQVERDFSPSSSSANRGTTPMHNA 120
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 3 VLSGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRP 54
V + A +L K GR Q SP+ R P+ ++E +P + L RP
Sbjct: 91 VTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERP 142
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKAR 57
R R SPSY +R+P + S + +S + P P+ R
Sbjct: 229 RYDGTRRYASPSYGRDRSPGGNALPANGRSHNLTSDGMNPSPRER 273
>06_03_1320 -
29292986-29293005,29293222-29293282,29293530-29293804,
29293881-29293974
Length = 149
Score = 25.0 bits (52), Expect = 7.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 17 GRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRPFRC 64
GR+Q +P A+ PS+L + N S ++ + P ARA RP C
Sbjct: 3 GRSQLNPD-ASPFIPSSLSLFTYNDSKRQAESSSMNDPSARACRPSMC 49
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 21 TSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGR 60
T P+ A +P LP R+R SP S R ++R+ R
Sbjct: 34 TDPAAAGSPSPP-LPPRKRRLSPTPSPTRRSSRSRSRSPR 72
>03_05_0019 + 19862171-19863049
Length = 292
Score = 25.0 bits (52), Expect = 7.5
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 2 TVLSGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTL----GPRPKAR 57
T + C LP ++ +T P+ AA P+ P +R P + GP PK +
Sbjct: 141 TAAAASVCTLPMRAEDLFRTKPTAAA---PATPPAAKRPPEPPPKTTQRQQPPGPPPKPQ 197
Query: 58 AGRPFR 63
P R
Sbjct: 198 PSAPKR 203
>12_01_0518 -
4093206-4094955,4095357-4095810,4095966-4096236,
4096308-4096628
Length = 931
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 10 LLPRKSSGRTQTSPSYAAERNPS 32
L PR +SG TSP+ A PS
Sbjct: 303 LNPRNNSGDQATSPAITASETPS 325
>12_01_0512 -
4055074-4055337,4055424-4055727,4055774-4055898,
4055995-4056164,4056264-4056524,4056644-4057153,
4057309-4057588,4057669-4057971
Length = 738
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 10 LLPRKSSGRTQTSPSYAAERNPS 32
L PR +SG TSP+ A PS
Sbjct: 300 LNPRNNSGDQATSPAITASETPS 322
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 10 LLPRKSSGRTQTSPSYAAERNPSNL---PVRERNFS 42
+L R++SGR T+PS + +PS+ PV RN S
Sbjct: 87 MLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRNNS 122
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 2 TVLSGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAG 59
TV+ D R+S+ +++P+ AA S LP ++ P P A+AG
Sbjct: 150 TVVDDDTPKGQRRSANAEESAPAAAANHGNSRLP--RSSYVPPHLRGQAAPAAPAQAG 205
>06_03_1358 - 29548440-29549315
Length = 291
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 12 PRKSSGRTQTSPSYAAERNPSNLP 35
P KS GR+ T+P + + PS P
Sbjct: 69 PAKSLGRSATAPPHHTDPPPSETP 92
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 24.6 bits (51), Expect = 10.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 12 PRKSSGRTQTSPSYAAERNPSNL--PVRERNFSPDRSSVTLGPRPKARAGRPFR 63
PR S SP R+ S PV+ER+ S T PR K+ + P +
Sbjct: 227 PRSRSASRSHSPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSASKSPVK 280
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 12 PRKSSGRTQTSPSYAAERNPSNLP 35
PR SSGR +T S +R+ N P
Sbjct: 499 PRTSSGRERTPASRLRDRDADNRP 522
>01_05_0812 +
25444351-25444658,25444967-25445231,25445303-25445384,
25446139-25446212,25446308-25446368,25446482-25446624
Length = 310
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 9 CLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLG 51
C+ R + R PS R P +P RN SS+ +G
Sbjct: 8 CIKRRHDAERNLRKPSSCLVRKPPGIPCVARNKKVKYSSLCVG 50
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.132 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,672
Number of Sequences: 37544
Number of extensions: 78689
Number of successful extensions: 225
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 20
length of query: 86
length of database: 14,793,348
effective HSP length: 65
effective length of query: 21
effective length of database: 12,352,988
effective search space: 259412748
effective search space used: 259412748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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