Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001006-TA|BGIBMGA001006-PA|undefined
(86 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.40
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 29 0.54
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.71
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.71
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94) 28 0.93
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06) 28 0.93
SB_25048| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09) 27 2.2
SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8) 27 2.9
SB_26951| Best HMM Match : CUB (HMM E-Value=0) 26 3.8
SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09) 26 5.0
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 26 5.0
SB_4062| Best HMM Match : MCPVI (HMM E-Value=7.5) 26 5.0
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 25 6.6
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.6
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 25 6.6
SB_4741| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.6
SB_56389| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.5) 25 8.7
SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.7
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 25 8.7
SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7) 25 8.7
>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 29.5 bits (63), Expect = 0.40
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 12 PRKSSGRTQTSPS-YAAERN----PSNLPVRERNFSPDRSSVTLGPRPKARAGRPFR 63
P K GR+ PS AE+N P PVR R ++ S P PK + +P R
Sbjct: 166 PPKRQGRSPGRPSNVTAEKNEPETPKRSPVRSRKAKEEKVSEEKTPSPKKPSPKPER 222
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 29.1 bits (62), Expect = 0.54
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 7 DACLLPRKSSGRTQTSPSYAAE-RNPSNLPVRERNFSPDR-SSVTLGPRPKARAG 59
D C +P + SP + AE R P+ +P R P R +L RP R G
Sbjct: 1549 DECQMPPPDPAERRVSPPFPAERRTPTPVPAERRVSPPSRLPPPSLHIRPSDRPG 1603
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 0.71
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 SPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRP 61
SP ER+ SN P RER+ SPD + G R ++++ P
Sbjct: 155 SPERRRERSFSNSPKRERH-SPDHRNGNEGTRDRSQSRSP 193
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.7 bits (61), Expect = 0.71
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 14 KSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRPFR 63
+ GR + S S ++ R+ S+ R R+ SPDR + P P+ R+ PFR
Sbjct: 610 RDKGRKR-SQSRSSSRSRSSSYSRSRSRSPDRRKRSYSPPPRRRS--PFR 656
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRPFR 63
R+S R ++SP+ + R+ S P ++ SP S V + K + P +
Sbjct: 676 RRSPARIKSSPARSRSRSQSASPRHSKSKSPALSKVQVKTEKKTPSPPPIK 726
>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
Length = 969
Score = 28.3 bits (60), Expect = 0.93
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 13 RKSS-GRTQ-TSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRP 61
RKSS G++ TSP ERN + PVR +F+ S+ + P P A P
Sbjct: 404 RKSSPGKSLVTSPCTVQERNTDS-PVRSLDFTAHNSASAVVPHPSAPQQSP 453
>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
Length = 1003
Score = 28.3 bits (60), Expect = 0.93
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 14 KSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGR 60
KS T SP+ + N S +R R++ + ++VT+GP AGR
Sbjct: 720 KSEYATFVSPTASVYINESGEVLRARDYYTNGTNVTIGPIYVCHAGR 766
>SB_25048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 3 VLSGDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSS 47
+L G AC R+++ + + +P +R S P R+RN SP R +
Sbjct: 1 ILYGVACSPQRETTSKHKANPHNHTKRLSSFSPQRQRN-SPQRET 44
>SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)
Length = 1069
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 14 KSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGR 60
KS T +P+ + N S +R R++ + ++VT+GP AGR
Sbjct: 680 KSEYATLVTPTGSVYINASGEVLRARDYYTNGTNVTIGPIYVCHAGR 726
>SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)
Length = 672
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 16 SGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPR 53
+ R SPS + R+P+ R R+ SP R S T PR
Sbjct: 455 ASRRSISPSRS--RSPTRTHSRSRSISPKRRSFTTTPR 490
>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
Length = 794
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 6 GDACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTL 50
G+ + + G + SP+Y ER+PSN+ R + +PD + L
Sbjct: 328 GNDSTIELQGEGASFRSPNYP-ERSPSNMRCRWKIIAPDGMIIQL 371
>SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)
Length = 678
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 37 RERNFSPDRSSVTLGPRPKARA 58
R R FSP +S LG P+ARA
Sbjct: 76 RRRPFSPKKSLGNLGKDPRARA 97
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 8 ACLLPRKSSGRTQTSPSYAAERNPSNL 34
+C++P ++ +T T PS ++ P+NL
Sbjct: 196 SCIIPCPTTQKTTTKPSTTSQDAPTNL 222
>SB_4062| Best HMM Match : MCPVI (HMM E-Value=7.5)
Length = 290
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 7 DACLLPRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPR 53
D C++ + + ++ + P LP + R+F P S T G R
Sbjct: 3 DCCVIRADNGLQCESFREGPTKTRPGALPAKHRDFQPKMFSTTGGER 49
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 15 SSGRTQTSPSYAAERNPSNLPVRERNFSPDRSS 47
SS + +S S AE+ P L +E SPDR++
Sbjct: 2625 SSQDSDSSRSGLAEQRPLELKSKEPELSPDRTT 2657
>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 12 PRKSSGRTQTSPSYAAERNPS 32
P K GRT + PS+ ++ NPS
Sbjct: 147 PSKICGRTPSPPSWRSDPNPS 167
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 8 ACLLPRKSSGRTQTSPSYAAERNPSNL 34
ACL R + R+QT SY+ + P L
Sbjct: 113 ACLWARYNESRSQTFLSYSTKNTPDEL 139
>SB_4741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 2 TVLSGDACLLPRKSSGRTQTSP-SYAAERNPSNL 34
T LSG+AC L +QT P +YA R S L
Sbjct: 177 TNLSGEACELQLPQGTASQTGPGNYAPPRRMSEL 210
>SB_56389| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.5)
Length = 473
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 30 NPSNLPV-RERNFSPDRSSVTLGPR 53
N ++LP+ RE F+PD+ + + PR
Sbjct: 6 NMTSLPLCREAEFAPDQPQIVIDPR 30
>SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 14 KSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSS---VTLGPRPKARAGRP 61
KSS T+T+ + A +R+ S V R + DR++ V L + K G P
Sbjct: 26 KSSSETRTNEALAFQRDYSQSAVAVRRLNRDRNTPVHVHLKKKKKKLKGAP 76
>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
Length = 539
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 17 GRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRP 54
G + PSYA PSNLP N+ RS+ RP
Sbjct: 240 GGYHSRPSYAIYDTPSNLPA--ANYPSSRSASMSIKRP 275
>SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)
Length = 567
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 12 PRKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPKARAGRP 61
PR++S +T+TS + +++ + +++ + R + T R K + +P
Sbjct: 439 PRQTSSKTKTSKNKRSKQQEKDKQEQDKQAARKRQARTSQARCKTKTSKP 488
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.132 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,942
Number of Sequences: 59808
Number of extensions: 92551
Number of successful extensions: 244
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 27
length of query: 86
length of database: 16,821,457
effective HSP length: 63
effective length of query: 23
effective length of database: 13,053,553
effective search space: 300231719
effective search space used: 300231719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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