GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001006-TA|BGIBMGA001006-PA|undefined
         (86 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   0.70 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   1.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   1.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   1.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    20   3.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   3.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   5.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    19   8.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    19   8.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    19   8.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    19   8.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    19   8.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    19   8.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 0.70
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 25 YAAERNPSNLPVRERNFSPDRSSVTLGPRPKAR 57
          ++AE + SN P     FSP    + L   P+ R
Sbjct: 33 HSAESSASNSPDHYERFSPSTHLMDLSSPPEHR 65


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 19  TQTSPSYAAERNPSNLPVRERNFSPDRSSVTLG 51
           T TSPSY    + S  P    +F    S  +LG
Sbjct: 77  TSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLG 109


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 9   CLLPRKSSGRTQTSPSYAAERNPSNLPV-RERNFSPD 44
           CLL ++ +G TQT+ +      P NL +  ER +  +
Sbjct: 291 CLLKKERNGPTQTTLNATTLFCPPNLRLTSERGYEQE 327


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 9   CLLPRKSSGRTQTSPSYAAERNPSNLPV-RERNFSPD 44
           CLL ++ +G TQT+ +      P NL +  ER +  +
Sbjct: 381 CLLKKERNGPTQTTLNATTLFCPPNLRLTSERGYEQE 417


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
          R S  R +   SY  ER       R +  S DR+       PK
Sbjct: 38 RYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPK 80


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
          determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
          R S  R +   SY  ER       R +  S DR+       PK
Sbjct: 38 RYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPK 80


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 13  RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
           R S  R +   SY  ER       R +  S DR+       PK
Sbjct: 271 RYSRSREREQNSYKNEREYRKYRERSKERSRDRTERERSREPK 313


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
          determiner protein.
          Length = 189

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 12/43 (27%), Positives = 15/43 (34%)

Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
          R S  R +   SY  ER         +  S DR+       PK
Sbjct: 38 RYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSKEPK 80


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
          determiner protein.
          Length = 189

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 12/43 (27%), Positives = 15/43 (34%)

Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
          R S  R +   SY  ER         +  S DR+       PK
Sbjct: 38 RYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSKEPK 80


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 13/43 (30%), Positives = 14/43 (32%)

Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
          R S  R +   SY  ER         R  S DR        PK
Sbjct: 38 RYSRSREREQKSYKNEREYREYRETSRERSRDRKERERSKEPK 80


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 13/43 (30%), Positives = 14/43 (32%)

Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
          R S  R +   SY  ER         R  S DR        PK
Sbjct: 38 RYSRSREREQKSYKNEREYREYRETSRERSRDRKERERSKEPK 80


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 13/43 (30%), Positives = 14/43 (32%)

Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
          R S  R +   SY  ER         R  S DR        PK
Sbjct: 38 RYSRSREREQKSYKNEREYREYRETSRERSRDRKERERSKEPK 80


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 13/43 (30%), Positives = 14/43 (32%)

Query: 13 RKSSGRTQTSPSYAAERNPSNLPVRERNFSPDRSSVTLGPRPK 55
          R S  R +   SY  ER         R  S DR        PK
Sbjct: 38 RYSRSREREQKSYKNEREYREYRETSRERSRDRKERERSKEPK 80


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,125
Number of Sequences: 429
Number of extensions: 1079
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 86
length of database: 140,377
effective HSP length: 48
effective length of query: 38
effective length of database: 119,785
effective search space:  4551830
effective search space used:  4551830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)