Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001005-TA|BGIBMGA001005-PA|IPR001128|Cytochrome P450,
IPR002401|E-class P450, group I, IPR000923|Blue (type 1) copper domain
         (344 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...   356   e-100
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...   116   2e-28
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    69   4e-14
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.7  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score =  356 bits (875), Expect = e-100
 Identities = 172/295 (58%), Positives = 221/295 (74%), Gaps = 7/295 (2%)

Query: 44  KVIKNKKETYLENKAKGIIPPTLEELTHHSGEILANNAKTLSDTVFKGYRDDLDFNDEND 103
           KVI+ KKE Y   K + II  + ++    +  I+     +   +V  G +DDLD +D  D
Sbjct: 257 KVIQLKKEEYKSGK-RNIIDNSAQKTESKTNNIVVEGV-SFGQSV--GLKDDLDIDD--D 310

Query: 104 VGEKKRLAFLDLMIESSQNGTNKISDHEIKEEVDTIMFEGHDTTAAGSSFVLCLLGIHQD 163
           VGEKKR AFLDL+IE+ QNG   ++D E+KE+VDTIMFEGHDTTA+GSSF L ++G H D
Sbjct: 311 VGEKKRQAFLDLLIEAGQNGV-LLTDKEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPD 369

Query: 164 VQARVYDELYQIFGDSDRPATFADTLEMKYLERVILESLRLYPPVPVIARKLNRDVTIST 223
           +Q +V  EL +IFGDSDRPATF DTLEMKYLER +LE+LR+YPPVP+IAR++  D+ +++
Sbjct: 370 IQEKVIQELDEIFGDSDRPATFQDTLEMKYLERCLLETLRMYPPVPLIAREIKTDLKLAS 429

Query: 224 KNYVIPAGTTVVIGTFKLHRQPKYYKDPEVFNPDNFLPENTQNRHYYSYIPFSAGPRSCV 283
            +Y IPAG TVVIGTFKLHRQP  Y +P+VF+PDNFLPE T NRHYY+++PFSAGPRSCV
Sbjct: 430 GDYTIPAGCTVVIGTFKLHRQPHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCV 489

Query: 284 GRKYAXXXXXXXXXXXXRNFRTISEIPEKEFKLQGDIILKRAEGFQMKVEPRKRV 338
           GRKYA            RNFR  S++ E EF+LQ DIILKRA+GF++++EPRK+V
Sbjct: 490 GRKYAMLKLKIVLSTILRNFRVRSDVKESEFRLQADIILKRADGFKIRLEPRKQV 544



 Score = 30.7 bits (66), Expect = 0.019
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 3  KLAELLPGPAPIPIFGNALTL 23
          +LAE +PGP  +P+ GNAL L
Sbjct: 39 ELAEKIPGPPALPLIGNALDL 59


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score =  116 bits (280), Expect = 2e-28
 Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 15/248 (6%)

Query: 94  DDLDFNDENDVGEKKRLAFLDLMIESSQNGTN----KISDHEIKEEVDTIMFEGHDTTAA 149
           D + + ++N++    R  F+++++E  +N       K++D  I  +       G +T++ 
Sbjct: 255 DTIKYRNDNNI---VRPDFINMLMELQKNPQKLENIKLTDSLIAAQAFVFFLAGFETSST 311

Query: 150 GSSFVLCLLGIHQDVQARVYDELYQIFGDSDRPATFADTLEMKYLERVILESLRLYPPVP 209
             S  L  L ++QDVQ ++ +E+      +++   + D  EM+YL++V  E+LR+YPP  
Sbjct: 312 TMSNALYELALNQDVQKKLREEINTFCPKNNKELKYDDIKEMEYLDKVFKETLRMYPPAS 371

Query: 210 VIARKLNRDVTISTKNYVIPAGTTVVIGTFKLHRQPKYYKDPEVFNPDNFLPENTQNRHY 269
           ++ RK   D T +     IP    + I  F +HR    Y +P+ F+P+ F  +   +RH 
Sbjct: 372 ILMRKAISDYTFNDTKITIPKEMKIWIPAFAIHRDSAIYPNPDSFDPERFDQDAMASRHP 431

Query: 270 YSYIPFSAGPRSCVGRKYAXXXXXXXXXXXXRNFRTISEIPEK-----EFKLQGDIILKR 324
             Y+PF  GPR+C+G ++A            RN +   E+ EK     EF   G  +L  
Sbjct: 432 MHYLPFGDGPRNCIGARFAVYQTKVGLITILRNHKV--EVCEKTIIPYEFD-PGAFLLSP 488

Query: 325 AEGFQMKV 332
            +G  +K+
Sbjct: 489 KDGIYLKI 496



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)

Query: 10 GPAPIPIFGNA--LTLMRKS 27
          GP P+P FG    L L++KS
Sbjct: 36 GPKPVPFFGTTKDLILVKKS 55


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 69.3 bits (162), Expect = 4e-14
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 153 FVLCLLGIHQDVQARVYDELYQIFGDSDRPATFADTLEMKYLERVILESLRLYPPVPVIA 212
           F+  L+G +  VQ ++Y+E Y +   +    T  +  + KYL   I ESLRL P    IA
Sbjct: 341 FLFDLIGRNPTVQNKLYEETYAL-APAGCDLTIDNLRKAKYLRACITESLRLIPTTTCIA 399

Query: 213 RKLNRDVTISTKNYVIPAGTTVVIGTFKLHRQPKYYKDPEVFNPDNFLPENTQNRHYYSY 272
           R L+  + +S   Y + AGT V++ T+      + +KD + + P+ +    T +      
Sbjct: 400 RILDEPIELS--GYRLTAGTVVLLHTWIAGLNEENFKDAKKYLPERWTTPTTPHSPLL-V 456

Query: 273 IPFSAGPRSCVGRKYAXXXXXXXXXXXXRNFRTISEIPEKEFKLQGDIIL 322
            PF AG R C G+++             R F     I E+E  LQ + IL
Sbjct: 457 APFGAGRRICPGKRFVDLALQLILAKIIREFEI---IVEEELDLQFEFIL 503



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 3  KLAELLPGPAPIPIFG 18
          K    +PGP  +PIFG
Sbjct: 48 KTVSKVPGPFSLPIFG 63


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 54  LENKAKGIIPPTLEELTHHSGEILANNAKTLSDTVFKGYRDDLDFNDENDVG 105
           LEN +   I P L E   H    L N   T   T  K   D +DF+  N +G
Sbjct: 188 LENISLNGIDPELTESEQHR---LQNRLYTNDSTSSKTDDDSIDFDRMNSLG 236


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 54  LENKAKGIIPPTLEELTHHSGEILANNAKTLSDTVFKGYRDDLDFNDENDVG 105
           LEN +   I P L E   H    L N   T   T  K   D +DF+  N +G
Sbjct: 226 LENISLNGIDPELTESEQHR---LQNRLYTNDSTSSKTDDDSIDFDRMNSLG 274


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 76  ILANNAKTLSDTVFKGYRDDLDFNDENDVGEKKRLAFLDLMIESSQNGTNKISDH 130
           +L     T SD + +G  +  D   +   GE  +  F    I++  N TN+I++H
Sbjct: 135 VLPGKPTTTSDELKRGIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEH 189


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 205 YPPVPVIARKLNRDVTISTKNYVIPAGTTVVIGTFKLHRQPKY 247
           YP   ++  +  R + I+ K  V P GT ++    ++  Q  Y
Sbjct: 517 YPIESIVWERDTRVLPINRKQKVFPNGTLIIENVERMSDQATY 559


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 147 TAAGSSFVLCLLGIHQDVQARVYDELYQI 175
           T+AGS   +C+L +  +V  R Y  +  +
Sbjct: 108 TSAGSLLHICMLELGHEVCGRFYGNIQTV 136


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 217  RDVTISTKNYVIPAGTTVVIGTFKLHRQP 245
            RD      N +I   TTV  G+ + HR+P
Sbjct: 1301 RDAVTVPGNNLIATNTTVSSGSSEDHRRP 1329


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 205 YPPVPVIARKLNRDVTISTKNYVIPAGTTVVIGTFK 240
           YP   +   + NR++    +  V+P GT V+    K
Sbjct: 545 YPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQK 580


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 205 YPPVPVIARKLNRDVTISTKNYVIPAGTTVVIGTFK 240
           YP   +   + NR++    +  V+P GT V+    K
Sbjct: 545 YPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQK 580


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,326
Number of Sequences: 429
Number of extensions: 4889
Number of successful extensions: 31
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 14
length of query: 344
length of database: 140,377
effective HSP length: 58
effective length of query: 286
effective length of database: 115,495
effective search space: 33031570
effective search space used: 33031570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)