Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001005-TA|BGIBMGA001005-PA|IPR001128|Cytochrome P450,
IPR002401|E-class P450, group I, IPR000923|Blue (type 1) copper domain
(344 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 89 9e-19
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 69 1e-12
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 31 0.32
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 29 0.96
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 29 0.96
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 29 1.3
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 29 1.3
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 28 1.7
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 28 1.7
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 28 2.2
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 27 5.1
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 6.8
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 89.0 bits (211), Expect = 9e-19
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Query: 126 KISDHEIKEEVDTIMFEGHDTTAAGSSFVLCLLGIHQDVQARVYDELYQIF-GDSDRPAT 184
+ SD EI + +F D T++ +++ LL H DV +V +E +I GD D P +
Sbjct: 303 EFSDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLS 362
Query: 185 FADTLEMKYLERVILESLRLYPPVPVIARKLNRDVTISTKNYVIPAGTTVVIGTFKLHRQ 244
+M Y V+ E LRL PPV ++ ++ + I T +Y +P V+ +
Sbjct: 363 LDLMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPI-TPDYTVPKDAMVIPTLYGALHD 421
Query: 245 PKYYKDPEVFNPDNFLPENTQNRHYYSYIPFSAGPRSCVGRKYA 288
K Y +PE FNPD + P + +++ F GP C+G++YA
Sbjct: 422 SKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYA 465
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 68.5 bits (160), Expect = 1e-12
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 127 ISDHEIKEEVDTIMFEGHDTTAAGSSFVLCLLGIHQDVQARVYDELYQIFGDSDRPATFA 186
+ +HEI + ++ G T+AA +VL LLG ++ +++E ++ G++ F
Sbjct: 273 LKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGEN-LELKFD 331
Query: 187 DTLEMKYLERVILESLRLYPPVPVIARKLNRDVTISTKNYVIPAGTTVVIGTFKLHRQPK 246
+M L VI E+LRL+PP+ RK+ RD+ + VIPA ++ + +
Sbjct: 332 QYKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEE 391
Query: 247 YYK-----DPEVFNPDNFLPENTQNRHY-YS---------YIPFSAGPRSCVGRKYA 288
Y+ DP+ +N EN + Y Y Y+PF AG C+G ++A
Sbjct: 392 YFTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFA 448
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 30.7 bits (66), Expect = 0.32
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 86 DTVFKGYRDDLDFNDENDVGEKKRLAFLDLMIESSQNGTNKISDHEIK-EEVDTI 139
D GY D+LD+N E++VGE F E+ +N + SD++ EE D +
Sbjct: 1949 DNASSGYEDELDYN-EDEVGENDSTTF-----EAMENAFTETSDNDDHLEEADHV 1997
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 29.1 bits (62), Expect = 0.96
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 40 NFLLKVIKNKKETYLENKAKGIIPPTLEELTHHSGEILANNAKTLSDTVFKGYRDD 95
N + VI E LEN ++P LE+L+++S +++ AK + T+ + +DD
Sbjct: 470 NIISSVIGRNAELDLENPISSLLP-ALEQLSNYSNREISDLAKDVYKTLIQS-KDD 523
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 29.1 bits (62), Expect = 0.96
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 51 ETYLENKAKGIIPPTLEELTHHSGEILANNAKTLSDTVFKG-YRDDLDFNDENDVGEKKR 109
E Y E K +P TL+E+ + NA ++ V+K D D ND + +
Sbjct: 376 EEYEEEFLKTYVPRTLDEVYDIDRDTEIVNAGGVNSLVYKHLLNTDFQKLDLNDTTKNQN 435
Query: 110 LAFLDLMIESSQNGTNKISDHEIKEE 135
L S + N IS E +EE
Sbjct: 436 DQILPNETSESDDDANSISSMENEEE 461
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 216 NRDVTISTKNYVIPAGTTVVIGTFKLHRQPKY 247
NRD T+ + Y IP T++ GT + P++
Sbjct: 222 NRDSTVYQERYQIPEAETIIRGTLRYQGFPEF 253
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 28.7 bits (61), Expect = 1.3
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 55 ENKAKGIIPPTLEELTHHSGEILANNAKTLSDTVFKGYRDDLDFNDENDVGEKKRLAFLD 114
+ K+K IPPTLEE H+S + NAK K ++ + + + E+K+ F +
Sbjct: 4 KQKSKQGIPPTLEE-NHNSSHKVTENAKKR-----KHSKEKPQNSRKRQLAEEKKSLFEN 57
Query: 115 LMIESSQNGTNKISDHEIKEEVDTIMFEGHD 145
S+N + I E EE +T+ HD
Sbjct: 58 ---SDSENEKDLIDADEF-EEAETLSDLEHD 84
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 71 HHSGEILANNAKTLSDTVFKGYRDDLDFNDENDVGEKK 108
H+ L++N +S V +GY DD F++E + G +
Sbjct: 72 HNLNHELSSNKNRISSNV-EGYEDDFSFDEEGEEGNNE 108
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 58 AKGIIPPTLEELTHHSGEILANNAKTLSDTVFKGYRDDLDFNDENDVGEKKRLAFLDLMI 117
+K + PP ++ + + L + +D + + ++ D N+EN +A D
Sbjct: 185 SKSLSPPAPQDESQGTEINLKQKIEEENDEILEDSKESKDENEENKETSTTNVAETDAPE 244
Query: 118 ESSQNGTNKISD---HEIKEE 135
E + + +I+D H +KEE
Sbjct: 245 EETVDTVEEIADEEKHSVKEE 265
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 89 FKGYRDDLDFNDENDVGEKKRLAFLDLMIESSQNGTNKISDHEIKEEV 136
++GY DL+ N+E+D+G+ F+ E + + D E +EEV
Sbjct: 320 YRGYNKDLEENEEDDLGD-----FIAEEEEEEEQEEEQEEDEEDEEEV 362
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex
subunit Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 42 LLKVIKNKKETY-LENKAKGIIPPTLEELTHHSGEILANNAKTLSDTVFKGYR 93
L++++ K TY L++K+ TLE+ H +LAN + +F GY+
Sbjct: 9 LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 6.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 214 KLNRDVTISTKNYVIPAGTTVVIGT 238
KL+ + T+ +NY +P G + +G+
Sbjct: 228 KLSEETTVLMRNYTLPDGRVIKVGS 252
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.138 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,134
Number of Sequences: 5004
Number of extensions: 73455
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 13
length of query: 344
length of database: 2,362,478
effective HSP length: 73
effective length of query: 271
effective length of database: 1,997,186
effective search space: 541237406
effective search space used: 541237406
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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